miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6292 3' -49.8 NC_001844.1 + 140448 1.13 0.005789
Target:  5'- cCACUAGAAACCCAAAAGCCAGCACCCu -3'
miRNA:   3'- -GUGAUCUUUGGGUUUUCGGUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 136264 0.87 0.225645
Target:  5'- cCGgUGGAGACCCAcgcuGAGCuCAGCACCCg -3'
miRNA:   3'- -GUgAUCUUUGGGUu---UUCG-GUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 67195 0.75 0.743842
Target:  5'- aGCUAGAgaaccGACgCAAAAcugcGCCAGCGCCUa -3'
miRNA:   3'- gUGAUCU-----UUGgGUUUU----CGGUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 61363 0.74 0.793445
Target:  5'- gGCUccAGAgCCAGGAGCCAGCugCUg -3'
miRNA:   3'- gUGAucUUUgGGUUUUCGGUCGugGG- -5'
6292 3' -49.8 NC_001844.1 + 64584 0.74 0.793445
Target:  5'- uCGCUuuGAGCguuuUCAGAAGCCAGCACCa -3'
miRNA:   3'- -GUGAucUUUG----GGUUUUCGGUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 57100 0.74 0.829396
Target:  5'- cCugUGGAGGCCgAGcaggugccggcauGAGCCAGCGCUUc -3'
miRNA:   3'- -GugAUCUUUGGgUU-------------UUCGGUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 143968 0.73 0.839012
Target:  5'- aCACgucgGGggGCCCAGu--CCAGUugCCa -3'
miRNA:   3'- -GUGa---UCuuUGGGUUuucGGUCGugGG- -5'
6292 3' -49.8 NC_001844.1 + 137183 0.73 0.847534
Target:  5'- gCGCccugucCCCAAAGGCgGGCGCCCg -3'
miRNA:   3'- -GUGaucuuuGGGUUUUCGgUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 56660 0.71 0.919719
Target:  5'- aGCUGGGGACaaaaaCCAcAAGCCAGUGCUa -3'
miRNA:   3'- gUGAUCUUUG-----GGUuUUCGGUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 18136 0.71 0.919719
Target:  5'- cCGCUGGAuuCCCu-AAGgUAGCGCCa -3'
miRNA:   3'- -GUGAUCUuuGGGuuUUCgGUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 115760 0.71 0.925527
Target:  5'- gGCUAGcuACCCGGcccAAGCacaGGCugCCu -3'
miRNA:   3'- gUGAUCuuUGGGUU---UUCGg--UCGugGG- -5'
6292 3' -49.8 NC_001844.1 + 113365 0.71 0.93107
Target:  5'- gAgUGGGAGCCgGGGuucGGUCAGCGCUCg -3'
miRNA:   3'- gUgAUCUUUGGgUUU---UCGGUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 81108 0.71 0.93107
Target:  5'- uCGCUgAGAAGCCCAAGGGUuaacggUAGCACg- -3'
miRNA:   3'- -GUGA-UCUUUGGGUUUUCG------GUCGUGgg -5'
6292 3' -49.8 NC_001844.1 + 115441 0.71 0.936347
Target:  5'- cCGCUGG--GCUCGAGAcugcuGCCuGCGCCCu -3'
miRNA:   3'- -GUGAUCuuUGGGUUUU-----CGGuCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 113742 0.7 0.94136
Target:  5'- aCGgUGGAcACCCG--GGCCGgagagcGCACCCg -3'
miRNA:   3'- -GUgAUCUuUGGGUuuUCGGU------CGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 114501 0.7 0.94136
Target:  5'- cCGCUGuu--CCCcGAGGCCuGGCGCCCc -3'
miRNA:   3'- -GUGAUcuuuGGGuUUUCGG-UCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 116326 0.7 0.954419
Target:  5'- cCGCUgcucacaccauccGGAGACCCAuggcccGGGUCGGaCGCCCc -3'
miRNA:   3'- -GUGA-------------UCUUUGGGUu-----UUCGGUC-GUGGG- -5'
6292 3' -49.8 NC_001844.1 + 17429 0.7 0.954831
Target:  5'- aGCUGGAAGaucgUCCGAGGGCaaaggcaucucCAGCACCa -3'
miRNA:   3'- gUGAUCUUU----GGGUUUUCG-----------GUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 116195 0.7 0.954831
Target:  5'- gCGCUAcgccGAAGCCCAGAccGCC-GUACCUg -3'
miRNA:   3'- -GUGAU----CUUUGGGUUUu-CGGuCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 142437 0.7 0.954831
Target:  5'- uGCgccguGGCCCGAGGGCCGcGCACaCCc -3'
miRNA:   3'- gUGaucu-UUGGGUUUUCGGU-CGUG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.