miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6292 3' -49.8 NC_001844.1 + 4354 0.66 0.993816
Target:  5'- gGCUGGAAcCCUAGAGGCUAuagacuuGCACa- -3'
miRNA:   3'- gUGAUCUUuGGGUUUUCGGU-------CGUGgg -5'
6292 3' -49.8 NC_001844.1 + 5309 0.68 0.976698
Target:  5'- aACUGGAAACagCGcgccugggaaaaacAGAGCCaagaagcAGCACCCg -3'
miRNA:   3'- gUGAUCUUUGg-GU--------------UUUCGG-------UCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 17429 0.7 0.954831
Target:  5'- aGCUGGAAGaucgUCCGAGGGCaaaggcaucucCAGCACCa -3'
miRNA:   3'- gUGAUCUUU----GGGUUUUCG-----------GUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 18136 0.71 0.919719
Target:  5'- cCGCUGGAuuCCCu-AAGgUAGCGCCa -3'
miRNA:   3'- -GUGAUCUuuGGGuuUUCgGUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 22158 0.69 0.972313
Target:  5'- gACUAGAAauucACCUAAA--CCAGCGCaCCc -3'
miRNA:   3'- gUGAUCUU----UGGGUUUucGGUCGUG-GG- -5'
6292 3' -49.8 NC_001844.1 + 23453 0.66 0.996772
Target:  5'- aAC-AGGAACUCAcuucAGAGCCAGCcuGCUUg -3'
miRNA:   3'- gUGaUCUUUGGGU----UUUCGGUCG--UGGG- -5'
6292 3' -49.8 NC_001844.1 + 28818 0.67 0.989282
Target:  5'- aCGCUAGAAGCUgCGAAauGGUCAGUugUg -3'
miRNA:   3'- -GUGAUCUUUGG-GUUU--UCGGUCGugGg -5'
6292 3' -49.8 NC_001844.1 + 31415 0.66 0.994766
Target:  5'- ---gGGGAACCgaGGGAGCCGacGCACCa -3'
miRNA:   3'- gugaUCUUUGGg-UUUUCGGU--CGUGGg -5'
6292 3' -49.8 NC_001844.1 + 53828 0.66 0.994766
Target:  5'- -uUUAGcAACCCAAAAGCaugaacaCACCCu -3'
miRNA:   3'- guGAUCuUUGGGUUUUCGguc----GUGGG- -5'
6292 3' -49.8 NC_001844.1 + 55591 0.67 0.992939
Target:  5'- -gUUGGggGCCUuAGAGCUuGC-CCCa -3'
miRNA:   3'- guGAUCuuUGGGuUUUCGGuCGuGGG- -5'
6292 3' -49.8 NC_001844.1 + 56660 0.71 0.919719
Target:  5'- aGCUGGGGACaaaaaCCAcAAGCCAGUGCUa -3'
miRNA:   3'- gUGAUCUUUG-----GGUuUUCGGUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 57100 0.74 0.829396
Target:  5'- cCugUGGAGGCCgAGcaggugccggcauGAGCCAGCGCUUc -3'
miRNA:   3'- -GugAUCUUUGGgUU-------------UUCGGUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 58796 0.66 0.99619
Target:  5'- gGCgcaGAACUC-GAGGCCGGC-CCCa -3'
miRNA:   3'- gUGaucUUUGGGuUUUCGGUCGuGGG- -5'
6292 3' -49.8 NC_001844.1 + 59581 0.66 0.996127
Target:  5'- aGCUGGccacguuuUCCAaugcugcGAGGCCAGC-CCCa -3'
miRNA:   3'- gUGAUCuuu-----GGGU-------UUUCGGUCGuGGG- -5'
6292 3' -49.8 NC_001844.1 + 61363 0.74 0.793445
Target:  5'- gGCUccAGAgCCAGGAGCCAGCugCUg -3'
miRNA:   3'- gUGAucUUUgGGUUUUCGGUCGugGG- -5'
6292 3' -49.8 NC_001844.1 + 64584 0.74 0.793445
Target:  5'- uCGCUuuGAGCguuuUCAGAAGCCAGCACCa -3'
miRNA:   3'- -GUGAucUUUG----GGUUUUCGGUCGUGGg -5'
6292 3' -49.8 NC_001844.1 + 67195 0.75 0.743842
Target:  5'- aGCUAGAgaaccGACgCAAAAcugcGCCAGCGCCUa -3'
miRNA:   3'- gUGAUCU-----UUGgGUUUU----CGGUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 78012 0.68 0.98612
Target:  5'- gGCgcGAuuuACCCGAGAcGCCAgGCgGCCCu -3'
miRNA:   3'- gUGauCUu--UGGGUUUU-CGGU-CG-UGGG- -5'
6292 3' -49.8 NC_001844.1 + 80470 0.68 0.982288
Target:  5'- gGCUAuGGGACCCAGuuugaAGUACCCa -3'
miRNA:   3'- gUGAU-CUUUGGGUUuucggUCGUGGG- -5'
6292 3' -49.8 NC_001844.1 + 81108 0.71 0.93107
Target:  5'- uCGCUgAGAAGCCCAAGGGUuaacggUAGCACg- -3'
miRNA:   3'- -GUGA-UCUUUGGGUUUUCG------GUCGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.