miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6295 3' -63 NC_001844.1 + 145468 0.67 0.581555
Target:  5'- aCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145432 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145396 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145360 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145324 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145288 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145252 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145216 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 145180 0.66 0.610423
Target:  5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3'
miRNA:   3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5'
6295 3' -63 NC_001844.1 + 144588 0.69 0.46154
Target:  5'- cUCCACggCCCCGgCUCCgCGCCgUCCg -3'
miRNA:   3'- -GGGUGgaGGGGUgGAGGgGUGG-AGGg -5'
6295 3' -63 NC_001844.1 + 143699 0.66 0.610423
Target:  5'- gCCAgCUCUCCAaagcgcgcgcCCUCCCUgGCCggaggCCCg -3'
miRNA:   3'- gGGUgGAGGGGU----------GGAGGGG-UGGa----GGG- -5'
6295 3' -63 NC_001844.1 + 143341 0.66 0.636519
Target:  5'- cCCCGCCg--CCGgCUCCaggggcucggagcgCCGCUUCCCg -3'
miRNA:   3'- -GGGUGGaggGGUgGAGG--------------GGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 141847 0.7 0.386533
Target:  5'- uCCCGCgagUCCCCGgUUCCCCcauagcgcacCCUCCCc -3'
miRNA:   3'- -GGGUGg--AGGGGUgGAGGGGu---------GGAGGG- -5'
6295 3' -63 NC_001844.1 + 137923 0.7 0.370988
Target:  5'- gUCCACCagCCCCAucauacCCUCCCUGuCC-CCCu -3'
miRNA:   3'- -GGGUGGa-GGGGU------GGAGGGGU-GGaGGG- -5'
6295 3' -63 NC_001844.1 + 136660 0.66 0.620082
Target:  5'- aCCCgGCCgcgCCCggucagugCGCCUaggCUCCACgCUCCCg -3'
miRNA:   3'- -GGG-UGGa--GGG--------GUGGA---GGGGUG-GAGGG- -5'
6295 3' -63 NC_001844.1 + 135996 0.69 0.470345
Target:  5'- uCCCGCUcCCCCugC-CCCCACaggcgggUUCCg -3'
miRNA:   3'- -GGGUGGaGGGGugGaGGGGUGg------AGGG- -5'
6295 3' -63 NC_001844.1 + 135887 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135855 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135823 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135791 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.