miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6299 3' -54.1 NC_001844.1 + 94760 0.66 0.933924
Target:  5'- cACCGCGcGCagaUGCUAggaaguCCACuAGCUGCg -3'
miRNA:   3'- -UGGUGU-CG---ACGAUgau---GGUG-UCGACG- -5'
6299 3' -54.1 NC_001844.1 + 98017 0.66 0.933407
Target:  5'- gACCGCgAGCU-CUuuuuauaACUACCugGGCUaaGCg -3'
miRNA:   3'- -UGGUG-UCGAcGA-------UGAUGGugUCGA--CG- -5'
6299 3' -54.1 NC_001844.1 + 40634 0.66 0.928637
Target:  5'- cGCCGCAGCuUGCgugGCUGCauCACG--UGCg -3'
miRNA:   3'- -UGGUGUCG-ACGa--UGAUG--GUGUcgACG- -5'
6299 3' -54.1 NC_001844.1 + 52077 0.66 0.923094
Target:  5'- uACgACgaGGCaGUaGCUACCGCGGCgGCg -3'
miRNA:   3'- -UGgUG--UCGaCGaUGAUGGUGUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 65061 0.66 0.917296
Target:  5'- aGCCucaguuugaGGCUGUUACUucaGCAGCUGUu -3'
miRNA:   3'- -UGGug-------UCGACGAUGAuggUGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 135100 0.67 0.90494
Target:  5'- aGCCaaaGCAGCcGUaGCUACCuccuCAGCgGCa -3'
miRNA:   3'- -UGG---UGUCGaCGaUGAUGGu---GUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 80888 0.67 0.90494
Target:  5'- cCCGCAGgUGUaGCUGgCAuCAGCUGa -3'
miRNA:   3'- uGGUGUCgACGaUGAUgGU-GUCGACg -5'
6299 3' -54.1 NC_001844.1 + 103798 0.67 0.891584
Target:  5'- uCC-CAGCUGUUagcGCUAuCCACAGuCUGg -3'
miRNA:   3'- uGGuGUCGACGA---UGAU-GGUGUC-GACg -5'
6299 3' -54.1 NC_001844.1 + 102153 0.67 0.88454
Target:  5'- aACCAuucCAGCgGCgGC-ACCAUAGCUGg -3'
miRNA:   3'- -UGGU---GUCGaCGaUGaUGGUGUCGACg -5'
6299 3' -54.1 NC_001844.1 + 39758 0.68 0.854031
Target:  5'- uCUACAacucuCUGCU-UUGCCGCAGCUGUc -3'
miRNA:   3'- uGGUGUc----GACGAuGAUGGUGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 115765 0.68 0.845851
Target:  5'- gUCACGGCUaGCUACccgGCCcaagcACAgGCUGCc -3'
miRNA:   3'- uGGUGUCGA-CGAUGa--UGG-----UGU-CGACG- -5'
6299 3' -54.1 NC_001844.1 + 37700 0.68 0.845851
Target:  5'- uACCACGGCggauuggucUGgUACUGCCGCuAGCa-- -3'
miRNA:   3'- -UGGUGUCG---------ACgAUGAUGGUG-UCGacg -5'
6299 3' -54.1 NC_001844.1 + 137538 0.68 0.845851
Target:  5'- uGCCGgAGCagagccuuccGCUGCggGCCAC-GCUGCg -3'
miRNA:   3'- -UGGUgUCGa---------CGAUGa-UGGUGuCGACG- -5'
6299 3' -54.1 NC_001844.1 + 29415 0.68 0.837464
Target:  5'- cGCCGCucugGGCcGC-GCUGCCGCAaCUGCc -3'
miRNA:   3'- -UGGUG----UCGaCGaUGAUGGUGUcGACG- -5'
6299 3' -54.1 NC_001844.1 + 113688 0.69 0.828008
Target:  5'- uACCGCcAGCggGUU-CUGCCagacuacACGGCUGCa -3'
miRNA:   3'- -UGGUG-UCGa-CGAuGAUGG-------UGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 3936 0.69 0.79271
Target:  5'- gACCAUGGCgGgUGCUACaGCAGCgacUGCa -3'
miRNA:   3'- -UGGUGUCGaCgAUGAUGgUGUCG---ACG- -5'
6299 3' -54.1 NC_001844.1 + 65636 0.7 0.744103
Target:  5'- aAUCACGGC-GCUugUuggaGCCcUAGCUGCa -3'
miRNA:   3'- -UGGUGUCGaCGAugA----UGGuGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 97521 0.72 0.650868
Target:  5'- uGCCACuGCUugUACaaaGCCAUAGCUGCu -3'
miRNA:   3'- -UGGUGuCGAcgAUGa--UGGUGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 49036 0.72 0.640302
Target:  5'- aACCACcGUgGCUACUGCaCACggugaAGCUGCc -3'
miRNA:   3'- -UGGUGuCGaCGAUGAUG-GUG-----UCGACG- -5'
6299 3' -54.1 NC_001844.1 + 120571 0.72 0.640302
Target:  5'- cCCGCAGCggaagGCU-CUGCUccggcauCAGCUGCa -3'
miRNA:   3'- uGGUGUCGa----CGAuGAUGGu------GUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.