miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6314 3' -56.2 NC_001844.1 + 37456 0.66 0.90194
Target:  5'- aGGUccucuaucuccacGCCuAGGACCCCCAcAGCaucACCa -3'
miRNA:   3'- aCCA-------------UGG-UCUUGGGGGU-UCGga-UGGc -5'
6314 3' -56.2 NC_001844.1 + 114136 0.66 0.889437
Target:  5'- cUGG-ACUGGGcCCCCCGAcguGUCUGCCc -3'
miRNA:   3'- -ACCaUGGUCUuGGGGGUU---CGGAUGGc -5'
6314 3' -56.2 NC_001844.1 + 44776 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44722 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44668 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44614 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44560 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44506 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44452 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44398 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 44344 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6314 3' -56.2 NC_001844.1 + 120279 0.66 0.868031
Target:  5'- aUGGU--CAGAGCCgCCGggaAGCCUGgCGg -3'
miRNA:   3'- -ACCAugGUCUUGGgGGU---UCGGAUgGC- -5'
6314 3' -56.2 NC_001844.1 + 116490 0.66 0.867283
Target:  5'- cUGcGUugGCCGGGGCCUCUAAGCgcaagcgCUGCCa -3'
miRNA:   3'- -AC-CA--UGGUCUUGGGGGUUCG-------GAUGGc -5'
6314 3' -56.2 NC_001844.1 + 117822 0.67 0.860461
Target:  5'- aGGUA--AGAGCUCCCGggggacGGCUUACCa -3'
miRNA:   3'- aCCAUggUCUUGGGGGU------UCGGAUGGc -5'
6314 3' -56.2 NC_001844.1 + 126792 0.67 0.860461
Target:  5'- aGGU-UUGGGGCCCCUcuGCCUGCUu -3'
miRNA:   3'- aCCAuGGUCUUGGGGGuuCGGAUGGc -5'
6314 3' -56.2 NC_001844.1 + 113248 0.67 0.852683
Target:  5'- cUGGUugCAGAucACCCUgGGGUgaGCCc -3'
miRNA:   3'- -ACCAugGUCU--UGGGGgUUCGgaUGGc -5'
6314 3' -56.2 NC_001844.1 + 121830 0.67 0.852683
Target:  5'- gGGUcuccACCGGcgcGGCgCCUAGGUCUACCa -3'
miRNA:   3'- aCCA----UGGUC---UUGgGGGUUCGGAUGGc -5'
6314 3' -56.2 NC_001844.1 + 9258 0.67 0.844705
Target:  5'- gUGGUACCuacGACCUaCAAGCC-ACCa -3'
miRNA:   3'- -ACCAUGGuc-UUGGGgGUUCGGaUGGc -5'
6314 3' -56.2 NC_001844.1 + 114470 0.68 0.802043
Target:  5'- --uUACCuucGACCCCCAGGCCcuggcUACCa -3'
miRNA:   3'- accAUGGuc-UUGGGGGUUCGG-----AUGGc -5'
6314 3' -56.2 NC_001844.1 + 144468 0.68 0.802043
Target:  5'- gUGGaACCcGAGCCCCUcGGCCUggGCUc -3'
miRNA:   3'- -ACCaUGGuCUUGGGGGuUCGGA--UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.