miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
633 3' -57.6 AC_000017.1 + 11086 1.08 0.000284
Target:  5'- gCAGCGGCAAGAGCAAGAGCAGCGGCAg -3'
miRNA:   3'- -GUCGCCGUUCUCGUUCUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 26755 0.8 0.045227
Target:  5'- cCGGCGGCAgcGGcAGCAAcAGCAGCGGCc -3'
miRNA:   3'- -GUCGCCGU--UC-UCGUUcUCGUCGCCGu -5'
633 3' -57.6 AC_000017.1 + 2173 0.78 0.055896
Target:  5'- gCAGCaGCAGGAGgAAGccaGGCGGCGGCGg -3'
miRNA:   3'- -GUCGcCGUUCUCgUUC---UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 17594 0.74 0.110846
Target:  5'- gGGCuGGCGAcGGCGAcGGCGGCGGCGg -3'
miRNA:   3'- gUCG-CCGUUcUCGUUcUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 9746 0.74 0.124555
Target:  5'- -cGUGGCGGGcGGCAGcGGGCGGCGGUc -3'
miRNA:   3'- guCGCCGUUC-UCGUU-CUCGUCGCCGu -5'
633 3' -57.6 AC_000017.1 + 2201 0.73 0.12711
Target:  5'- nGGCGGCAGGAGC-AGAGCccauggaacccgagAGcCGGCc -3'
miRNA:   3'- gUCGCCGUUCUCGuUCUCG--------------UC-GCCGu -5'
633 3' -57.6 AC_000017.1 + 15073 0.72 0.170709
Target:  5'- gCGGCGGCAAcaaCAGuGGCAGCGGCGc -3'
miRNA:   3'- -GUCGCCGUUcucGUUcUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 9407 0.71 0.185727
Target:  5'- uGGCGGCGguGGGGgAGGGGggacaCGGCGGCGa -3'
miRNA:   3'- gUCGCCGU--UCUCgUUCUC-----GUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 16267 0.7 0.213348
Target:  5'- gGGCGGCAGugccGGGUcGGcGGCGGUGGCGa -3'
miRNA:   3'- gUCGCCGUU----CUCGuUC-UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 23925 0.7 0.231564
Target:  5'- uCAGCcGCuuuuuuGGGGGCGcgcggGGGGCGGCGGCGa -3'
miRNA:   3'- -GUCGcCG------UUCUCGU-----UCUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 27498 0.69 0.247066
Target:  5'- aCAGUGGUggGAGCgggAcuuuccugguacaccAGGGCAGCGGg- -3'
miRNA:   3'- -GUCGCCGuuCUCG---U---------------UCUCGUCGCCgu -5'
633 3' -57.6 AC_000017.1 + 12083 0.69 0.251074
Target:  5'- gGGCccuGGCu--GGCAcGGGCAGCGGCGa -3'
miRNA:   3'- gUCG---CCGuucUCGUuCUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 26842 0.69 0.26482
Target:  5'- gCGGCGGCAGcAGCAGGAGgAGgagcgcugcgucUGGCGc -3'
miRNA:   3'- -GUCGCCGUUcUCGUUCUCgUC------------GCCGU- -5'
633 3' -57.6 AC_000017.1 + 18663 0.68 0.294131
Target:  5'- -cGCGGCuAGGGCGGGuuacaacaacGGCGGaCGGCc -3'
miRNA:   3'- guCGCCGuUCUCGUUC----------UCGUC-GCCGu -5'
633 3' -57.6 AC_000017.1 + 15657 0.68 0.301843
Target:  5'- uGGCGGau-GAGCuGGGAGUAGaCGGCc -3'
miRNA:   3'- gUCGCCguuCUCG-UUCUCGUC-GCCGu -5'
633 3' -57.6 AC_000017.1 + 34324 0.68 0.30971
Target:  5'- -uGCGGUgguGGAuGUuaucAGGGCAGCGGCGc -3'
miRNA:   3'- guCGCCGu--UCU-CGu---UCUCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 29310 0.68 0.3129
Target:  5'- aGGuuGUAAGcuguuuugcaaugcaAGCAAGaAGCGGCGGCAg -3'
miRNA:   3'- gUCgcCGUUC---------------UCGUUC-UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 3867 0.68 0.317732
Target:  5'- gCGGUGGCugcAGCGGcugaAGCGGCGGCGg -3'
miRNA:   3'- -GUCGCCGuucUCGUUc---UCGUCGCCGU- -5'
633 3' -57.6 AC_000017.1 + 22112 0.67 0.360169
Target:  5'- aCAGCGGUcGGGGgAAGAgGCAaUGGCGc -3'
miRNA:   3'- -GUCGCCGuUCUCgUUCU-CGUcGCCGU- -5'
633 3' -57.6 AC_000017.1 + 26243 0.67 0.360169
Target:  5'- -cGCGGCugcugcugauAGGGCu---GCGGCGGCGg -3'
miRNA:   3'- guCGCCGu---------UCUCGuucuCGUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.