Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
633 | 3' | -57.6 | AC_000017.1 | + | 11086 | 1.08 | 0.000284 |
Target: 5'- gCAGCGGCAAGAGCAAGAGCAGCGGCAg -3' miRNA: 3'- -GUCGCCGUUCUCGUUCUCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 24659 | 0.66 | 0.425912 |
Target: 5'- gAGCGGaCAAGcAGCu--GGCcuuGCGGCAg -3' miRNA: 3'- gUCGCC-GUUC-UCGuucUCGu--CGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 8622 | 0.66 | 0.425912 |
Target: 5'- gGGgGGCucgggacccgccGGGAGaGGGGGCAGgGGCAc -3' miRNA: 3'- gUCgCCG------------UUCUCgUUCUCGUCgCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 4618 | 0.66 | 0.396861 |
Target: 5'- --aUGGCAAuGGGCccacGGGCGGCGGCc -3' miRNA: 3'- gucGCCGUU-CUCGuu--CUCGUCGCCGu -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 15201 | 0.66 | 0.396861 |
Target: 5'- aAGCGcGCuGAGGcCGAG-GCAGCGGCc -3' miRNA: 3'- gUCGC-CG-UUCUcGUUCuCGUCGCCGu -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 14202 | 0.66 | 0.396861 |
Target: 5'- -cGUGGUGAGcgcGGCGccAGuGGCGGCGGCGc -3' miRNA: 3'- guCGCCGUUC---UCGU--UC-UCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 30514 | 0.67 | 0.378216 |
Target: 5'- gCAGCGucuGCuacaGAGGcGCAA-AGCAGCGGCAg -3' miRNA: 3'- -GUCGC---CG----UUCU-CGUUcUCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 18077 | 0.67 | 0.369117 |
Target: 5'- --uCGGCAccAGCAAuauGAGCGGUGGCGc -3' miRNA: 3'- gucGCCGUucUCGUU---CUCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 26842 | 0.69 | 0.26482 |
Target: 5'- gCGGCGGCAGcAGCAGGAGgAGgagcgcugcgucUGGCGc -3' miRNA: 3'- -GUCGCCGUUcUCGUUCUCgUC------------GCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 12083 | 0.69 | 0.251074 |
Target: 5'- gGGCccuGGCu--GGCAcGGGCAGCGGCGa -3' miRNA: 3'- gUCG---CCGuucUCGUuCUCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 26755 | 0.8 | 0.045227 |
Target: 5'- cCGGCGGCAgcGGcAGCAAcAGCAGCGGCc -3' miRNA: 3'- -GUCGCCGU--UC-UCGUUcUCGUCGCCGu -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 2173 | 0.78 | 0.055896 |
Target: 5'- gCAGCaGCAGGAGgAAGccaGGCGGCGGCGg -3' miRNA: 3'- -GUCGcCGUUCUCgUUC---UCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 9746 | 0.74 | 0.124555 |
Target: 5'- -cGUGGCGGGcGGCAGcGGGCGGCGGUc -3' miRNA: 3'- guCGCCGUUC-UCGUU-CUCGUCGCCGu -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 2201 | 0.73 | 0.12711 |
Target: 5'- nGGCGGCAGGAGC-AGAGCccauggaacccgagAGcCGGCc -3' miRNA: 3'- gUCGCCGUUCUCGuUCUCG--------------UC-GCCGu -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 15073 | 0.72 | 0.170709 |
Target: 5'- gCGGCGGCAAcaaCAGuGGCAGCGGCGc -3' miRNA: 3'- -GUCGCCGUUcucGUUcUCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 9407 | 0.71 | 0.185727 |
Target: 5'- uGGCGGCGguGGGGgAGGGGggacaCGGCGGCGa -3' miRNA: 3'- gUCGCCGU--UCUCgUUCUC-----GUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 23925 | 0.7 | 0.231564 |
Target: 5'- uCAGCcGCuuuuuuGGGGGCGcgcggGGGGCGGCGGCGa -3' miRNA: 3'- -GUCGcCG------UUCUCGU-----UCUCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 23713 | 0.66 | 0.425912 |
Target: 5'- aCGGCaagggaGGUAAGcGCAcGGuGCGGCGGCu -3' miRNA: 3'- -GUCG------CCGUUCuCGU-UCuCGUCGCCGu -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 16267 | 0.7 | 0.213348 |
Target: 5'- gGGCGGCAGugccGGGUcGGcGGCGGUGGCGa -3' miRNA: 3'- gUCGCCGUU----CUCGuUC-UCGUCGCCGU- -5' |
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633 | 3' | -57.6 | AC_000017.1 | + | 27498 | 0.69 | 0.247066 |
Target: 5'- aCAGUGGUggGAGCgggAcuuuccugguacaccAGGGCAGCGGg- -3' miRNA: 3'- -GUCGCCGuuCUCG---U---------------UCUCGUCGCCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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