miRNA display CGI


Results 61 - 80 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 41341 0.66 0.846229
Target:  5'- cGGgGaCUCGgccgCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUgC-GAGUacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 985 0.66 0.846229
Target:  5'- cGGgGCUUccg--CCGCGGCgGCGGCa -3'
miRNA:   3'- uCUgCGAGuacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 100747 0.66 0.838086
Target:  5'- -aGCGCcgCGUcugCCGCGGCgGCGGCc -3'
miRNA:   3'- ucUGCGa-GUAcaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 47433 0.66 0.854175
Target:  5'- cGACGUcgUCGgcuucgCCGCcGCCGCGGCg -3'
miRNA:   3'- uCUGCG--AGUacaa--GGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70564 0.67 0.821243
Target:  5'- -cGCGCUCaAUGccCCGCGGCC-CGAg -3'
miRNA:   3'- ucUGCGAG-UACaaGGUGCCGGcGCUg -5'
6345 3' -56.7 NC_001847.1 + 104331 0.67 0.803706
Target:  5'- cGcCGC-CGUGUuugCCGCGGCgGCaGACg -3'
miRNA:   3'- uCuGCGaGUACAa--GGUGCCGgCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 116668 0.67 0.794699
Target:  5'- uGGugGCcugCGUGUgggUCCggcgcuGCGGgCGCGGCa -3'
miRNA:   3'- -UCugCGa--GUACA---AGG------UGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 47847 0.67 0.794699
Target:  5'- -cGCGCaaaUCGg---CCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCG---AGUacaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 102813 0.67 0.794699
Target:  5'- cAGGCccGCgaucgCGUGUUCCAgCGGgucccguuCCGCGGCg -3'
miRNA:   3'- -UCUG--CGa----GUACAAGGU-GCC--------GGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 105351 0.67 0.815181
Target:  5'- gGGGCGCUCGcg-UCCAcaaacggccagagccCGGCCGCcagggccGACa -3'
miRNA:   3'- -UCUGCGAGUacaAGGU---------------GCCGGCG-------CUG- -5'
6345 3' -56.7 NC_001847.1 + 99686 0.67 0.785543
Target:  5'- -aGCGcCUCucgcgCCGCGGCCGCGuCg -3'
miRNA:   3'- ucUGC-GAGuacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 584 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 106680 0.67 0.829755
Target:  5'- cGGCGCgUCGUG--CCACGGCgGCcauaGGCa -3'
miRNA:   3'- uCUGCG-AGUACaaGGUGCCGgCG----CUG- -5'
6345 3' -56.7 NC_001847.1 + 94681 0.67 0.785543
Target:  5'- aGGACGCUUAUG--CC-CGuGCCGCG-Ca -3'
miRNA:   3'- -UCUGCGAGUACaaGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 134477 0.67 0.781841
Target:  5'- uAGGCGCggccaacgaagugCAcggguguagugUGggCCguGCGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa------------GU-----------ACaaGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 128619 0.67 0.820382
Target:  5'- -cGCGCUucuaCGUGUUCCaggcugaGCGcGCCgGCGACg -3'
miRNA:   3'- ucUGCGA----GUACAAGG-------UGC-CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 86053 0.67 0.821243
Target:  5'- gAGGCGCUgG-GggCCACGGauGCGAg -3'
miRNA:   3'- -UCUGCGAgUaCaaGGUGCCggCGCUg -5'
6345 3' -56.7 NC_001847.1 + 78334 0.67 0.812558
Target:  5'- cGGGCccgGCUUggGcgCCGCGGCgGCGAa -3'
miRNA:   3'- -UCUG---CGAGuaCaaGGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 77894 0.67 0.812558
Target:  5'- -cGCGCUC-UGcgCgGCGGCgGUGGCg -3'
miRNA:   3'- ucUGCGAGuACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 47206 0.67 0.821243
Target:  5'- -cACGCUCAccgcgUgCGCGGCCGCGcCc -3'
miRNA:   3'- ucUGCGAGUaca--AgGUGCCGGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.