Results 41 - 60 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 63357 | 0.66 | 0.869452 |
Target: 5'- gGGGCGCgugcggCAcugUGUacucgUCCACGaGCCGCcGCa -3' miRNA: 3'- -UCUGCGa-----GU---ACA-----AGGUGC-CGGCGcUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 67281 | 0.66 | 0.869452 |
Target: 5'- gAGGCGCgCggGgaCUuggUGGCCGCGGCg -3' miRNA: 3'- -UCUGCGaGuaCaaGGu--GCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 86763 | 0.66 | 0.869452 |
Target: 5'- gAGGCccgGCcCGgcgGcgCCACGGUCGUGACg -3' miRNA: 3'- -UCUG---CGaGUa--CaaGGUGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 891 | 0.66 | 0.869452 |
Target: 5'- -cGCGC-CggGgccgCCGCGGCCGcCGGCc -3' miRNA: 3'- ucUGCGaGuaCaa--GGUGCCGGC-GCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 61423 | 0.66 | 0.869452 |
Target: 5'- cGGCcCUCGacgcCCGCGGCCGCGcCg -3' miRNA: 3'- uCUGcGAGUacaaGGUGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 40897 | 0.66 | 0.860386 |
Target: 5'- aGGGCGCgagccgcUCCACGGCcCGCG-Cg -3' miRNA: 3'- -UCUGCGaguaca-AGGUGCCG-GCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 12554 | 0.66 | 0.860386 |
Target: 5'- gGGACGCagGUGcgcaacgggcgCCGCGuaCGCGGCg -3' miRNA: 3'- -UCUGCGagUACaa---------GGUGCcgGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 41341 | 0.66 | 0.846229 |
Target: 5'- cGGgGaCUCGgccgCCGCGGCCGCG-Cg -3' miRNA: 3'- uCUgC-GAGUacaaGGUGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 59586 | 0.66 | 0.846229 |
Target: 5'- cGGCGCUCAcGggCagcuCGGCCGCcGAg -3' miRNA: 3'- uCUGCGAGUaCaaGgu--GCCGGCG-CUg -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 71960 | 0.66 | 0.846229 |
Target: 5'- ---gGCUCGg---CCAUGGCgCGCGACc -3' miRNA: 3'- ucugCGAGUacaaGGUGCCG-GCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 112276 | 0.66 | 0.846229 |
Target: 5'- cGACGaagcCGUGca-CACGGCCGCGuCg -3' miRNA: 3'- uCUGCga--GUACaagGUGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 129767 | 0.66 | 0.853389 |
Target: 5'- cGGcCGCUCGgaccgccggagccUGggCC-CGGCCGCGcCg -3' miRNA: 3'- -UCuGCGAGU-------------ACaaGGuGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 62144 | 0.66 | 0.854175 |
Target: 5'- cGGCGUgcgCAUGg-CCGCGGCgGCGu- -3' miRNA: 3'- uCUGCGa--GUACaaGGUGCCGgCGCug -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 66701 | 0.66 | 0.854175 |
Target: 5'- cGGGCGCggacc-UCUGCGGCCGCuucGACg -3' miRNA: 3'- -UCUGCGaguacaAGGUGCCGGCG---CUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 96487 | 0.66 | 0.854175 |
Target: 5'- cGGCGggCGUcg-CCACGGCaaCGCGGCg -3' miRNA: 3'- uCUGCgaGUAcaaGGUGCCG--GCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 20597 | 0.66 | 0.854175 |
Target: 5'- gGGGCGCaguUCAcuuugaaugUGUUCC-CGcGCCGCGcCg -3' miRNA: 3'- -UCUGCG---AGU---------ACAAGGuGC-CGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 47433 | 0.66 | 0.854175 |
Target: 5'- cGACGUcgUCGgcuucgCCGCcGCCGCGGCg -3' miRNA: 3'- uCUGCG--AGUacaa--GGUGcCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 85647 | 0.66 | 0.854175 |
Target: 5'- cAGGCGCgcgUCAgGUUUggCGCGGCCGUgcuGGCg -3' miRNA: 3'- -UCUGCG---AGUaCAAG--GUGCCGGCG---CUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 107127 | 0.66 | 0.854175 |
Target: 5'- cAGGCGCUCGUaag-CGCGGCaCGCcGCg -3' miRNA: 3'- -UCUGCGAGUAcaagGUGCCG-GCGcUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 119556 | 0.66 | 0.857297 |
Target: 5'- gGGGCGCgcggccagacucugCGggcagCgGCGGCCGCGGCc -3' miRNA: 3'- -UCUGCGa-------------GUacaa-GgUGCCGGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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