miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 76400 0.7 0.626399
Target:  5'- gGGGCGC-CggGggCCGCGGCgGgGGCa -3'
miRNA:   3'- -UCUGCGaGuaCaaGGUGCCGgCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 133074 0.73 0.47662
Target:  5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3'
miRNA:   3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130744 0.78 0.26248
Target:  5'- aGGACGCggaCA-GcgCCugGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUaCaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 18926 0.7 0.626399
Target:  5'- uAGugGCagGUGUcuUCCAgCGccGCCGCGGCg -3'
miRNA:   3'- -UCugCGagUACA--AGGU-GC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51379 0.82 0.140499
Target:  5'- uGACGCUCGcGgaggCCGCGGUCGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 13935 0.69 0.718072
Target:  5'- cGACgGCgUCAUGcgcgagCUGCGGCUGCGGCc -3'
miRNA:   3'- uCUG-CG-AGUACaa----GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 77552 0.76 0.31664
Target:  5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 18229 0.69 0.706051
Target:  5'- cGGCGgUCGUGcgcgcggguggaUCCAagaUGGCCGCGACc -3'
miRNA:   3'- uCUGCgAGUACa-----------AGGU---GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 72412 0.69 0.691914
Target:  5'- cGACGCggggacggCCACGGCCGCaACg -3'
miRNA:   3'- uCUGCGaguacaa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 107790 0.69 0.677678
Target:  5'- gGGGCaGCUgGggcugCgGCGGCCGCGGCa -3'
miRNA:   3'- -UCUG-CGAgUacaa-GgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 67443 0.7 0.667463
Target:  5'- cGGCGgUCAUcucgaggUCCagcgcgcgcgcgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCgAGUAca-----AGG------------UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 133504 0.7 0.646955
Target:  5'- cAGGCGCaCGUGUaccugcgcgCCGCGgugcuGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGUACAa--------GGUGC-----CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 32263 0.7 0.636678
Target:  5'- cAGACGCgugCGUGgcucgcgccgUCCGCGuGgCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUACa---------AGGUGC-CgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 91598 0.7 0.616123
Target:  5'- cGGCGCUCGcGgcggcgcuucUCCucGCGGCUGCGGCu -3'
miRNA:   3'- uCUGCGAGUaCa---------AGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 37568 0.72 0.544942
Target:  5'- aAGACGCggcggCGcUGgccgCUGCGGCUGCGGCg -3'
miRNA:   3'- -UCUGCGa----GU-ACaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 76469 0.72 0.515199
Target:  5'- cAGACGCgc---UUCCACGGCaGCGGCg -3'
miRNA:   3'- -UCUGCGaguacAAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33216 0.73 0.486136
Target:  5'- gGGugGCUCGgcuUGgcgCCGCGccgggcGCCGCGGCg -3'
miRNA:   3'- -UCugCGAGU---ACaa-GGUGC------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 3216 0.73 0.448649
Target:  5'- cGGCGCaCGUGccUCCGCGccGCCGCGGCu -3'
miRNA:   3'- uCUGCGaGUACa-AGGUGC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73325 0.73 0.448649
Target:  5'- cGGACGCcgacgaccUCAUGUUcgaCCAUGGCCaggGCGACc -3'
miRNA:   3'- -UCUGCG--------AGUACAA---GGUGCCGG---CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 83041 0.75 0.378806
Target:  5'- cGGcCGCUaGUGcgCUugGGCCGCGGCg -3'
miRNA:   3'- -UCuGCGAgUACaaGGugCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.