miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 21949 0.67 0.794699
Target:  5'- cGA-GCUCGUcGUccgggCgCugGGCCGCGGCg -3'
miRNA:   3'- uCUgCGAGUA-CAa----G-GugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 22123 0.68 0.728008
Target:  5'- cGGGCGCgcccUGggCCcgGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGagu-ACaaGG--UGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 22503 0.67 0.829755
Target:  5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3'
miRNA:   3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 22865 0.68 0.73786
Target:  5'- cGACGCggcCGUGUg-CACGGCuucguCGCGGCu -3'
miRNA:   3'- uCUGCGa--GUACAagGUGCCG-----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 24222 0.68 0.74762
Target:  5'- cAGGCGCUCGgcgaucUCCACGuucaGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUaca---AGGUGC----CGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 27316 0.68 0.766823
Target:  5'- cGGCGggCGUG-UCCACGGCaaucugccggggCGUGACg -3'
miRNA:   3'- uCUGCgaGUACaAGGUGCCG------------GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 27341 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 27504 0.69 0.697986
Target:  5'- gAGGC-CUCGgccgccgCCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGcGAGUacaa---GGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 27932 0.77 0.268816
Target:  5'- aGGACGCggaCAgg--CCugGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUacaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 27962 0.7 0.636678
Target:  5'- -cGCGCUCgcggucgcgGUGgaggcggCCGCGGCCGgGGCg -3'
miRNA:   3'- ucUGCGAG---------UACaa-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 28170 0.67 0.829755
Target:  5'- gAGGCGC-CGUuggGUUaCCugGCGGCCGCG-Cg -3'
miRNA:   3'- -UCUGCGaGUA---CAA-GG--UGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 28690 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 29197 0.67 0.829755
Target:  5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 29231 0.71 0.563054
Target:  5'- cAGACGauccgccacugCAUGgccCCGCGGCCGCGcACg -3'
miRNA:   3'- -UCUGCga---------GUACaa-GGUGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 29292 0.72 0.505429
Target:  5'- cGGCGCUgGcGgcagaggCCGCGGCCGCgGACa -3'
miRNA:   3'- uCUGCGAgUaCaa-----GGUGCCGGCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 29546 0.66 0.838086
Target:  5'- cGGGCGCUCGaGUUCCcccgcACGgacGCCGUGcCg -3'
miRNA:   3'- -UCUGCGAGUaCAAGG-----UGC---CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 30021 0.69 0.708062
Target:  5'- -aGCGCUgGccgcgUCUAUGGCCGCGGCc -3'
miRNA:   3'- ucUGCGAgUaca--AGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 30261 0.73 0.47662
Target:  5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3'
miRNA:   3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 30691 0.7 0.646955
Target:  5'- cAGGCGCaCGUGUaccugcgcgCCGCGgugcuGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGUACAa--------GGUGC-----CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 31234 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.