miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 120743 0.73 0.480416
Target:  5'- cAGAgGCUCGgucgccccugcaagGccaCCACGGCCGCGGCc -3'
miRNA:   3'- -UCUgCGAGUa-------------Caa-GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33216 0.73 0.486136
Target:  5'- gGGugGCUCGgcuUGgcgCCGCGccgggcGCCGCGGCg -3'
miRNA:   3'- -UCugCGAGU---ACaa-GGUGC------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5537 0.73 0.489967
Target:  5'- cGACGCUCGUGa-CgGCGGCCcagucgucgccguccGCGACg -3'
miRNA:   3'- uCUGCGAGUACaaGgUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 29292 0.72 0.505429
Target:  5'- cGGCGCUgGcGgcagaggCCGCGGCCGCgGACa -3'
miRNA:   3'- uCUGCGAgUaCaa-----GGUGCCGGCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 14446 0.72 0.505429
Target:  5'- cGGCGC-CGgggUgCGCGGCCGCGGCc -3'
miRNA:   3'- uCUGCGaGUacaAgGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119079 0.72 0.515199
Target:  5'- gAGGCGCccagCAgagGcgCCGCGGCCGCcGCg -3'
miRNA:   3'- -UCUGCGa---GUa--CaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 76469 0.72 0.515199
Target:  5'- cAGACGCgc---UUCCACGGCaGCGGCg -3'
miRNA:   3'- -UCUGCGaguacAAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87684 0.72 0.525045
Target:  5'- cGGGCGCUgGggcugcugcgGcgCCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGAgUa---------CaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87278 0.72 0.525045
Target:  5'- cGGACGUgcgCGccgacGgcCCGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUa----CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 35433 0.72 0.534961
Target:  5'- cAGAUGCUgAgcacgGUgcggcgcgaCGCGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGAgUa----CAag-------GUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 37568 0.72 0.544942
Target:  5'- aAGACGCggcggCGcUGgccgCUGCGGCUGCGGCg -3'
miRNA:   3'- -UCUGCGa----GU-ACaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52789 0.71 0.554983
Target:  5'- -cGCGCUCAUGUgcagugcgcCCugGcGCCGCGcACa -3'
miRNA:   3'- ucUGCGAGUACAa--------GGugC-CGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 4978 0.71 0.554983
Target:  5'- gGGGCaGCUgGgGUgCgGCGGCCGCGGCa -3'
miRNA:   3'- -UCUG-CGAgUaCAaGgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130070 0.71 0.554983
Target:  5'- cGACGCgUCGccgUCCugGGCCGCGcCc -3'
miRNA:   3'- uCUGCG-AGUacaAGGugCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 29231 0.71 0.563054
Target:  5'- cAGACGauccgccacugCAUGgccCCGCGGCCGCGcACg -3'
miRNA:   3'- -UCUGCga---------GUACaa-GGUGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 125535 0.71 0.565077
Target:  5'- cGGGCGCagcuacggUCGUcc-CCGCGGCUGCGGCu -3'
miRNA:   3'- -UCUGCG--------AGUAcaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 104868 0.71 0.575218
Target:  5'- -aGCGCUUGUGUcgUCUGC-GCCGCGGCg -3'
miRNA:   3'- ucUGCGAGUACA--AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33695 0.71 0.575218
Target:  5'- cAGGCGCUCGcgGcgCgGCGGCgCGUGGCc -3'
miRNA:   3'- -UCUGCGAGUa-CaaGgUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 109597 0.71 0.585401
Target:  5'- -cGCGCUCGUG-UCCGaGGUCGCGGa -3'
miRNA:   3'- ucUGCGAGUACaAGGUgCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 55921 0.71 0.585401
Target:  5'- -cGCGCcCGUGaUCCGCGGCCgGCGuCg -3'
miRNA:   3'- ucUGCGaGUACaAGGUGCCGG-CGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.