miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 14034 0.66 0.854175
Target:  5'- gAGGCGCUgGUcggCCGCGaGCCGCu-- -3'
miRNA:   3'- -UCUGCGAgUAcaaGGUGC-CGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 129767 0.66 0.853389
Target:  5'- cGGcCGCUCGgaccgccggagccUGggCC-CGGCCGCGcCg -3'
miRNA:   3'- -UCuGCGAGU-------------ACaaGGuGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 89687 0.66 0.846229
Target:  5'- uGGCGCgcgCuauUUgCGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGa--GuacAAgGUGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 112276 0.66 0.846229
Target:  5'- cGACGaagcCGUGca-CACGGCCGCGuCg -3'
miRNA:   3'- uCUGCga--GUACaagGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 985 0.66 0.846229
Target:  5'- cGGgGCUUccg--CCGCGGCgGCGGCa -3'
miRNA:   3'- uCUgCGAGuacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 41341 0.66 0.846229
Target:  5'- cGGgGaCUCGgccgCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUgC-GAGUacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 71960 0.66 0.846229
Target:  5'- ---gGCUCGg---CCAUGGCgCGCGACc -3'
miRNA:   3'- ucugCGAGUacaaGGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 59586 0.66 0.846229
Target:  5'- cGGCGCUCAcGggCagcuCGGCCGCcGAg -3'
miRNA:   3'- uCUGCGAGUaCaaGgu--GCCGGCG-CUg -5'
6345 3' -56.7 NC_001847.1 + 79185 0.66 0.838086
Target:  5'- cGGACGCggucgcgCggGUgcgcaUUCugGGCuCGCGACg -3'
miRNA:   3'- -UCUGCGa------GuaCA-----AGGugCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51072 0.66 0.838086
Target:  5'- gAGGCGUUCGUG---CGCGGgcuggucgaggaCCGCGACu -3'
miRNA:   3'- -UCUGCGAGUACaagGUGCC------------GGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 120120 0.66 0.838086
Target:  5'- cGGCGaCUCAag--CCAUuGCCGCGACc -3'
miRNA:   3'- uCUGC-GAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 41607 0.66 0.838086
Target:  5'- cGugGCgu-UGUUCUgcuccgccgugAUGGCCGCGAg -3'
miRNA:   3'- uCugCGaguACAAGG-----------UGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 14641 0.66 0.838086
Target:  5'- cGGCGCUCGcGcgCCGCucGCUGCGAg -3'
miRNA:   3'- uCUGCGAGUaCaaGGUGc-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 119201 0.66 0.838086
Target:  5'- uGGCgaGCUCGUcGgcgCCGCGGCCaccgcgggGCGGCg -3'
miRNA:   3'- uCUG--CGAGUA-Caa-GGUGCCGG--------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 64830 0.66 0.838086
Target:  5'- cGGGCGCuUCAgc-UCCgagaccagcgcgGCGcGCCGCGACc -3'
miRNA:   3'- -UCUGCG-AGUacaAGG------------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52084 0.66 0.838086
Target:  5'- -uGCGCUCuucggCCGC-GCCGCGGCc -3'
miRNA:   3'- ucUGCGAGuacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 103688 0.66 0.838086
Target:  5'- cGACGCcCAUGgcgcCCACGaucaccagcGCCaGCGACg -3'
miRNA:   3'- uCUGCGaGUACaa--GGUGC---------CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 29546 0.66 0.838086
Target:  5'- cGGGCGCUCGaGUUCCcccgcACGgacGCCGUGcCg -3'
miRNA:   3'- -UCUGCGAGUaCAAGG-----UGC---CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 64686 0.66 0.838086
Target:  5'- gGGACaC-CAUGUUUuuccugccgcgCGCGGCCGuCGACa -3'
miRNA:   3'- -UCUGcGaGUACAAG-----------GUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 35497 0.66 0.838086
Target:  5'- cGGCGCgcgCGgaggCCACGGCgCGCGcCg -3'
miRNA:   3'- uCUGCGa--GUacaaGGUGCCG-GCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.