miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 78528 0.66 0.861918
Target:  5'- -cGCGCUCGa---CCGCGGCCuCGGCc -3'
miRNA:   3'- ucUGCGAGUacaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 128018 0.66 0.861918
Target:  5'- --cUGCUCAcGggCCAggaggagccCGGCCGUGGCg -3'
miRNA:   3'- ucuGCGAGUaCaaGGU---------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2776 0.66 0.861918
Target:  5'- cGGCGCccccgCcgGcggccUCCAgGGCCGCGAg -3'
miRNA:   3'- uCUGCGa----GuaCa----AGGUgCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 12554 0.66 0.860386
Target:  5'- gGGACGCagGUGcgcaacgggcgCCGCGuaCGCGGCg -3'
miRNA:   3'- -UCUGCGagUACaa---------GGUGCcgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 40897 0.66 0.860386
Target:  5'- aGGGCGCgagccgcUCCACGGCcCGCG-Cg -3'
miRNA:   3'- -UCUGCGaguaca-AGGUGCCG-GCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 31950 0.66 0.858845
Target:  5'- cGGACGagccug--CCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCgaguacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119556 0.66 0.857297
Target:  5'- gGGGCGCgcggccagacucugCGggcagCgGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa-------------GUacaa-GgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 85647 0.66 0.854175
Target:  5'- cAGGCGCgcgUCAgGUUUggCGCGGCCGUgcuGGCg -3'
miRNA:   3'- -UCUGCG---AGUaCAAG--GUGCCGGCG---CUG- -5'
6345 3' -56.7 NC_001847.1 + 62144 0.66 0.854175
Target:  5'- cGGCGUgcgCAUGg-CCGCGGCgGCGu- -3'
miRNA:   3'- uCUGCGa--GUACaaGGUGCCGgCGCug -5'
6345 3' -56.7 NC_001847.1 + 35537 0.66 0.854175
Target:  5'- cGGCGaggUCGUGgcugCCgagGCGGCgCGCGACc -3'
miRNA:   3'- uCUGCg--AGUACaa--GG---UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 47433 0.66 0.854175
Target:  5'- cGACGUcgUCGgcuucgCCGCcGCCGCGGCg -3'
miRNA:   3'- uCUGCG--AGUacaa--GGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 20597 0.66 0.854175
Target:  5'- gGGGCGCaguUCAcuuugaaugUGUUCC-CGcGCCGCGcCg -3'
miRNA:   3'- -UCUGCG---AGU---------ACAAGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 13121 0.66 0.854175
Target:  5'- gGGGCGCgCGggcgGcgCCGCGccgccuGCCGCGGCc -3'
miRNA:   3'- -UCUGCGaGUa---CaaGGUGC------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 63579 0.66 0.854175
Target:  5'- uGACcCUCGUGUUCgACcgccaccccguGGCCGCGuGCc -3'
miRNA:   3'- uCUGcGAGUACAAGgUG-----------CCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 80484 0.66 0.854175
Target:  5'- -cGCGCUCcccGUUCCGCaGC-GCGGCg -3'
miRNA:   3'- ucUGCGAGua-CAAGGUGcCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 77267 0.66 0.854175
Target:  5'- cGGGCGacaccCUCGUGg-CgACGGCgGCGACc -3'
miRNA:   3'- -UCUGC-----GAGUACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 14034 0.66 0.854175
Target:  5'- gAGGCGCUgGUcggCCGCGaGCCGCu-- -3'
miRNA:   3'- -UCUGCGAgUAcaaGGUGC-CGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 41011 0.66 0.854175
Target:  5'- cGGCG-UCGUGccgUCCugcaacggGCGcGCCGCGGCg -3'
miRNA:   3'- uCUGCgAGUACa--AGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 107127 0.66 0.854175
Target:  5'- cAGGCGCUCGUaag-CGCGGCaCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUAcaagGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 96487 0.66 0.854175
Target:  5'- cGGCGggCGUcg-CCACGGCaaCGCGGCg -3'
miRNA:   3'- uCUGCgaGUAcaaGGUGCCG--GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.