Results 21 - 40 of 270 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 76469 | 0.72 | 0.515199 |
Target: 5'- cAGACGCgc---UUCCACGGCaGCGGCg -3' miRNA: 3'- -UCUGCGaguacAAGGUGCCGgCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 33216 | 0.73 | 0.486136 |
Target: 5'- gGGugGCUCGgcuUGgcgCCGCGccgggcGCCGCGGCg -3' miRNA: 3'- -UCugCGAGU---ACaa-GGUGC------CGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 93920 | 0.74 | 0.439529 |
Target: 5'- gAGACGCUCGacUGcgugaUCACGGgCGCGACg -3' miRNA: 3'- -UCUGCGAGU--ACaa---GGUGCCgGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 34766 | 0.76 | 0.31664 |
Target: 5'- uGGCGCggcUGcgcgCCGCGGCCGCGGCg -3' miRNA: 3'- uCUGCGaguACaa--GGUGCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 130775 | 0.7 | 0.636678 |
Target: 5'- -cGCGCUCgcggucgcgGUGgaggcggCCGCGGCCGgGGCg -3' miRNA: 3'- ucUGCGAG---------UACaa-----GGUGCCGGCgCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 29231 | 0.71 | 0.563054 |
Target: 5'- cAGACGauccgccacugCAUGgccCCGCGGCCGCGcACg -3' miRNA: 3'- -UCUGCga---------GUACaa-GGUGCCGGCGC-UG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 133074 | 0.73 | 0.47662 |
Target: 5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3' miRNA: 3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 130744 | 0.78 | 0.26248 |
Target: 5'- aGGACGCggaCA-GcgCCugGGCCGCGGCg -3' miRNA: 3'- -UCUGCGa--GUaCaaGGugCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 37568 | 0.72 | 0.544942 |
Target: 5'- aAGACGCggcggCGcUGgccgCUGCGGCUGCGGCg -3' miRNA: 3'- -UCUGCGa----GU-ACaa--GGUGCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 51379 | 0.82 | 0.140499 |
Target: 5'- uGACGCUCGcGgaggCCGCGGUCGCGGCg -3' miRNA: 3'- uCUGCGAGUaCaa--GGUGCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 31900 | 0.73 | 0.47662 |
Target: 5'- cGGAUGCcgccgCAgaucacggCCGCGGCCGCGGCu -3' miRNA: 3'- -UCUGCGa----GUacaa----GGUGCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 87278 | 0.72 | 0.525045 |
Target: 5'- cGGACGUgcgCGccgacGgcCCGCGGCCGCGGCc -3' miRNA: 3'- -UCUGCGa--GUa----CaaGGUGCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 3216 | 0.73 | 0.448649 |
Target: 5'- cGGCGCaCGUGccUCCGCGccGCCGCGGCu -3' miRNA: 3'- uCUGCGaGUACa-AGGUGC--CGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 73325 | 0.73 | 0.448649 |
Target: 5'- cGGACGCcgacgaccUCAUGUUcgaCCAUGGCCaggGCGACc -3' miRNA: 3'- -UCUGCG--------AGUACAA---GGUGCCGG---CGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 83041 | 0.75 | 0.378806 |
Target: 5'- cGGcCGCUaGUGcgCUugGGCCGCGGCg -3' miRNA: 3'- -UCuGCGAgUACaaGGugCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 77552 | 0.76 | 0.31664 |
Target: 5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3' miRNA: 3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 133504 | 0.7 | 0.646955 |
Target: 5'- cAGGCGCaCGUGUaccugcgcgCCGCGgugcuGCCGCGGCg -3' miRNA: 3'- -UCUGCGaGUACAa--------GGUGC-----CGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 32263 | 0.7 | 0.636678 |
Target: 5'- cAGACGCgugCGUGgcucgcgccgUCCGCGuGgCGCGGCc -3' miRNA: 3'- -UCUGCGa--GUACa---------AGGUGC-CgGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 96374 | 0.7 | 0.626399 |
Target: 5'- gGGACGCUCGUGcUCCagcACGGgcCCGCcGCc -3' miRNA: 3'- -UCUGCGAGUACaAGG---UGCC--GGCGcUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 33695 | 0.71 | 0.575218 |
Target: 5'- cAGGCGCUCGcgGcgCgGCGGCgCGUGGCc -3' miRNA: 3'- -UCUGCGAGUa-CaaGgUGCCG-GCGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home