miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 14364 0.84 0.099932
Target:  5'- cGACGCUCGcagaugCCACGGCCGCGGCc -3'
miRNA:   3'- uCUGCGAGUacaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33484 0.7 0.616123
Target:  5'- cGAgGCg-AUG-UCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUgCGagUACaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 91598 0.7 0.616123
Target:  5'- cGGCGCUCGcGgcggcgcuucUCCucGCGGCUGCGGCu -3'
miRNA:   3'- uCUGCGAGUaCa---------AGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5537 0.73 0.489967
Target:  5'- cGACGCUCGUGa-CgGCGGCCcagucgucgccguccGCGACg -3'
miRNA:   3'- uCUGCGAGUACaaGgUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70412 0.73 0.448649
Target:  5'- cGGAC-CUCGUGggcUgCACGGCCGCGuCg -3'
miRNA:   3'- -UCUGcGAGUACa--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 75701 0.7 0.636678
Target:  5'- gAGcCGCUCGgg--CCACgGGCCGCGGg -3'
miRNA:   3'- -UCuGCGAGUacaaGGUG-CCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 18926 0.7 0.626399
Target:  5'- uAGugGCagGUGUcuUCCAgCGccGCCGCGGCg -3'
miRNA:   3'- -UCugCGagUACA--AGGU-GC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134047 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87684 0.72 0.525045
Target:  5'- cGGGCGCUgGggcugcugcgGcgCCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGAgUa---------CaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 76469 0.72 0.515199
Target:  5'- cAGACGCgc---UUCCACGGCaGCGGCg -3'
miRNA:   3'- -UCUGCGaguacAAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 57118 0.75 0.370602
Target:  5'- -cGCGCgCAUGUUgggggacgCCAUGGCCGUGACg -3'
miRNA:   3'- ucUGCGaGUACAA--------GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134106 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 73284 0.7 0.656193
Target:  5'- cGGGCGCUCGgcaggCGCGGCCuacgccgGCGACg -3'
miRNA:   3'- -UCUGCGAGUacaagGUGCCGG-------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52937 0.7 0.646955
Target:  5'- uGGCGCg---GUUCgACcgaGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaguaCAAGgUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33695 0.71 0.575218
Target:  5'- cAGGCGCUCGcgGcgCgGCGGCgCGUGGCc -3'
miRNA:   3'- -UCUGCGAGUa-CaaGgUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 131503 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 82885 0.73 0.448649
Target:  5'- cGGGCGCgccgCAgccaagCCGCGGCgCGCGGCg -3'
miRNA:   3'- -UCUGCGa---GUacaa--GGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 77552 0.76 0.31664
Target:  5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 29292 0.72 0.505429
Target:  5'- cGGCGCUgGcGgcagaggCCGCGGCCGCgGACa -3'
miRNA:   3'- uCUGCGAgUaCaa-----GGUGCCGGCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 35433 0.72 0.534961
Target:  5'- cAGAUGCUgAgcacgGUgcggcgcgaCGCGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGAgUa----CAag-------GUGCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.