miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 131503 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 14364 0.84 0.099932
Target:  5'- cGACGCUCGcagaugCCACGGCCGCGGCc -3'
miRNA:   3'- uCUGCGAGUacaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51379 0.82 0.140499
Target:  5'- uGACGCUCGcGgaggCCGCGGUCGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 105055 0.74 0.42161
Target:  5'- uGGGCGCgggCGUGUgguagUCCccggGCGGCaCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUACA-----AGG----UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 93920 0.74 0.439529
Target:  5'- gAGACGCUCGacUGcgugaUCACGGgCGCGACg -3'
miRNA:   3'- -UCUGCGAGU--ACaa---GGUGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130744 0.78 0.26248
Target:  5'- aGGACGCggaCA-GcgCCugGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUaCaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 57118 0.75 0.370602
Target:  5'- -cGCGCgCAUGUUgggggacgCCAUGGCCGUGACg -3'
miRNA:   3'- ucUGCGaGUACAA--------GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134047 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 3216 0.73 0.448649
Target:  5'- cGGCGCaCGUGccUCCGCGccGCCGCGGCu -3'
miRNA:   3'- uCUGCGaGUACa-AGGUGC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 31900 0.73 0.47662
Target:  5'- cGGAUGCcgccgCAgaucacggCCGCGGCCGCGGCu -3'
miRNA:   3'- -UCUGCGa----GUacaa----GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 104985 0.66 0.869452
Target:  5'- gGGAagaGCggGUGgUCCGCGaGCCGCGcCg -3'
miRNA:   3'- -UCUg--CGagUACaAGGUGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 77552 0.76 0.31664
Target:  5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 34766 0.76 0.31664
Target:  5'- uGGCGCggcUGcgcgCCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaguACaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70412 0.73 0.448649
Target:  5'- cGGAC-CUCGUGggcUgCACGGCCGCGuCg -3'
miRNA:   3'- -UCUGcGAGUACa--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 82885 0.73 0.448649
Target:  5'- cGGGCGCgccgCAgccaagCCGCGGCgCGCGGCg -3'
miRNA:   3'- -UCUGCGa---GUacaa--GGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134106 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 133074 0.73 0.47662
Target:  5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3'
miRNA:   3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33216 0.73 0.486136
Target:  5'- gGGugGCUCGgcuUGgcgCCGCGccgggcGCCGCGGCg -3'
miRNA:   3'- -UCugCGAGU---ACaa-GGUGC------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 83041 0.75 0.378806
Target:  5'- cGGcCGCUaGUGcgCUugGGCCGCGGCg -3'
miRNA:   3'- -UCuGCGAgUACaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73325 0.73 0.448649
Target:  5'- cGGACGCcgacgaccUCAUGUUcgaCCAUGGCCaggGCGACc -3'
miRNA:   3'- -UCUGCG--------AGUACAA---GGUGCCGG---CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.