miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 584 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 613 0.69 0.68379
Target:  5'- cGACGCgcccCGUGUaccaccacaugcgCCGCGGCCGC-ACg -3'
miRNA:   3'- uCUGCGa---GUACAa------------GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 891 0.66 0.869452
Target:  5'- -cGCGC-CggGgccgCCGCGGCCGcCGGCc -3'
miRNA:   3'- ucUGCGaGuaCaa--GGUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 985 0.66 0.846229
Target:  5'- cGGgGCUUccg--CCGCGGCgGCGGCa -3'
miRNA:   3'- uCUgCGAGuacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 1089 0.7 0.657219
Target:  5'- -cACGC-CggGcgCCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCGaGuaCaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 1614 0.66 0.869452
Target:  5'- cGGCGCac-UGcgCCGCGGCagcacCGCGGCg -3'
miRNA:   3'- uCUGCGaguACaaGGUGCCG-----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2172 0.66 0.869452
Target:  5'- gGGAagaGCggGUGgUCCGCGaGCCGCGcCg -3'
miRNA:   3'- -UCUg--CGagUACaAGGUGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 2242 0.74 0.42161
Target:  5'- uGGGCGCgggCGUGUgguagUCCccggGCGGCaCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUACA-----AGG----UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2543 0.68 0.776248
Target:  5'- cGGCGCUCccg--CCGCcgGGCCGgGGCg -3'
miRNA:   3'- uCUGCGAGuacaaGGUG--CCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 2577 0.67 0.785543
Target:  5'- cGGGCGCcugCGcGgccgCCGCGGCCGC-ACg -3'
miRNA:   3'- -UCUGCGa--GUaCaa--GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 2776 0.66 0.861918
Target:  5'- cGGCGCccccgCcgGcggccUCCAgGGCCGCGAg -3'
miRNA:   3'- uCUGCGa----GuaCa----AGGUgCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 3088 0.66 0.869452
Target:  5'- cGGCGCgCAgg--CCGCGGCCGgcaGGCc -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCg--CUG- -5'
6345 3' -56.7 NC_001847.1 + 3216 0.73 0.448649
Target:  5'- cGGCGCaCGUGccUCCGCGccGCCGCGGCu -3'
miRNA:   3'- uCUGCGaGUACa-AGGUGC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 3419 0.68 0.776248
Target:  5'- cGGCgGCUCAUGg-CCACgcaGGCCGCcACg -3'
miRNA:   3'- uCUG-CGAGUACaaGGUG---CCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 4978 0.71 0.554983
Target:  5'- gGGGCaGCUgGgGUgCgGCGGCCGCGGCa -3'
miRNA:   3'- -UCUG-CGAgUaCAaGgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5370 0.68 0.776248
Target:  5'- cGGGCccagGCUCcgGcggUCCgaGCGGCCgGCGGCa -3'
miRNA:   3'- -UCUG----CGAGuaCa--AGG--UGCCGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5467 0.67 0.821243
Target:  5'- cGGcCGCUC----UCUGCGGCgGCGGCa -3'
miRNA:   3'- -UCuGCGAGuacaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5537 0.73 0.489967
Target:  5'- cGACGCUCGUGa-CgGCGGCCcagucgucgccguccGCGACg -3'
miRNA:   3'- uCUGCGAGUACaaGgUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5614 0.67 0.812558
Target:  5'- uAGACGggCGUGggcgCCGCGGucCCGCGcGCg -3'
miRNA:   3'- -UCUGCgaGUACaa--GGUGCC--GGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 8999 0.67 0.785543
Target:  5'- -cGCGCUguuugcCAUcgUgCGCGGCCGCGACc -3'
miRNA:   3'- ucUGCGA------GUAcaAgGUGCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.