miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 104985 0.66 0.869452
Target:  5'- gGGAagaGCggGUGgUCCGCGaGCCGCGcCg -3'
miRNA:   3'- -UCUg--CGagUACaAGGUGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 128018 0.66 0.861918
Target:  5'- --cUGCUCAcGggCCAggaggagccCGGCCGUGGCg -3'
miRNA:   3'- ucuGCGAGUaCaaGGU---------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2776 0.66 0.861918
Target:  5'- cGGCGCccccgCcgGcggccUCCAgGGCCGCGAg -3'
miRNA:   3'- uCUGCGa----GuaCa----AGGUgCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 40897 0.66 0.860386
Target:  5'- aGGGCGCgagccgcUCCACGGCcCGCG-Cg -3'
miRNA:   3'- -UCUGCGaguaca-AGGUGCCG-GCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 12554 0.66 0.860386
Target:  5'- gGGACGCagGUGcgcaacgggcgCCGCGuaCGCGGCg -3'
miRNA:   3'- -UCUGCGagUACaa---------GGUGCcgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119556 0.66 0.857297
Target:  5'- gGGGCGCgcggccagacucugCGggcagCgGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa-------------GUacaa-GgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 107127 0.66 0.854175
Target:  5'- cAGGCGCUCGUaag-CGCGGCaCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUAcaagGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 85647 0.66 0.854175
Target:  5'- cAGGCGCgcgUCAgGUUUggCGCGGCCGUgcuGGCg -3'
miRNA:   3'- -UCUGCG---AGUaCAAG--GUGCCGGCG---CUG- -5'
6345 3' -56.7 NC_001847.1 + 47433 0.66 0.854175
Target:  5'- cGACGUcgUCGgcuucgCCGCcGCCGCGGCg -3'
miRNA:   3'- uCUGCG--AGUacaa--GGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 43814 0.66 0.861918
Target:  5'- uGACGCUCG------ACGGCCGCGcCg -3'
miRNA:   3'- uCUGCGAGUacaaggUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 78528 0.66 0.861918
Target:  5'- -cGCGCUCGa---CCGCGGCCuCGGCc -3'
miRNA:   3'- ucUGCGAGUacaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 80150 0.66 0.861918
Target:  5'- -aGCGCg-GUGUUUgGCGGCUGCG-Cg -3'
miRNA:   3'- ucUGCGagUACAAGgUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 61423 0.66 0.869452
Target:  5'- cGGCcCUCGacgcCCGCGGCCGCGcCg -3'
miRNA:   3'- uCUGcGAGUacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 891 0.66 0.869452
Target:  5'- -cGCGC-CggGgccgCCGCGGCCGcCGGCc -3'
miRNA:   3'- ucUGCGaGuaCaa--GGUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 86763 0.66 0.869452
Target:  5'- gAGGCccgGCcCGgcgGcgCCACGGUCGUGACg -3'
miRNA:   3'- -UCUG---CGaGUa--CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 67281 0.66 0.869452
Target:  5'- gAGGCGCgCggGgaCUuggUGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGuaCaaGGu--GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 63357 0.66 0.869452
Target:  5'- gGGGCGCgugcggCAcugUGUacucgUCCACGaGCCGCcGCa -3'
miRNA:   3'- -UCUGCGa-----GU---ACA-----AGGUGC-CGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 3088 0.66 0.869452
Target:  5'- cGGCGCgCAgg--CCGCGGCCGgcaGGCc -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCg--CUG- -5'
6345 3' -56.7 NC_001847.1 + 1614 0.66 0.869452
Target:  5'- cGGCGCac-UGcgCCGCGGCagcacCGCGGCg -3'
miRNA:   3'- uCUGCGaguACaaGGUGCCG-----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 101243 0.66 0.861918
Target:  5'- cAGGCGgUCcUGcacgcCCGCGGCCacgcGCGGCg -3'
miRNA:   3'- -UCUGCgAGuACaa---GGUGCCGG----CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.