miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 132912 1.08 0.002287
Target:  5'- gAGACGCUCAUGUUCCACGGCCGCGACc -3'
miRNA:   3'- -UCUGCGAGUACAAGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 14364 0.84 0.099932
Target:  5'- cGACGCUCGcagaugCCACGGCCGCGGCc -3'
miRNA:   3'- uCUGCGAGUacaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69701 0.83 0.123361
Target:  5'- cGGCGCUCGg--UCCGCGGCgCGCGGCu -3'
miRNA:   3'- uCUGCGAGUacaAGGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51379 0.82 0.140499
Target:  5'- uGACGCUCGcGgaggCCGCGGUCGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 115819 0.8 0.176915
Target:  5'- cGGCGCUUgcGUUaacagCCACGGCCGCGGCc -3'
miRNA:   3'- uCUGCGAGuaCAA-----GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 105826 0.79 0.205654
Target:  5'- -cGCGCUCGcggcucgcuUG-UCCGCGGCCGCGGCc -3'
miRNA:   3'- ucUGCGAGU---------ACaAGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 42340 0.79 0.21082
Target:  5'- uGGGCGCcCGUGUggCGCGGCgGCGACg -3'
miRNA:   3'- -UCUGCGaGUACAagGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 98791 0.78 0.256266
Target:  5'- cGGCGCcgCGUGgcgcgCCGCGGCgCGCGGCa -3'
miRNA:   3'- uCUGCGa-GUACaa---GGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130744 0.78 0.26248
Target:  5'- aGGACGCggaCA-GcgCCugGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUaCaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 27932 0.77 0.268816
Target:  5'- aGGACGCggaCAgg--CCugGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUacaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 13921 0.77 0.281857
Target:  5'- gGGGCGCUCG-GUgCCGC-GCCGCGGCa -3'
miRNA:   3'- -UCUGCGAGUaCAaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 77552 0.76 0.31664
Target:  5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 34766 0.76 0.31664
Target:  5'- uGGCGCggcUGcgcgCCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaguACaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134106 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 62712 0.76 0.346727
Target:  5'- -aGCGUgcgCAUGUUCCgcguuGCGGCCGUGGCc -3'
miRNA:   3'- ucUGCGa--GUACAAGG-----UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 31293 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 57118 0.75 0.370602
Target:  5'- -cGCGCgCAUGUUgggggacgCCAUGGCCGUGACg -3'
miRNA:   3'- ucUGCGaGUACAA--------GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 88536 0.75 0.370602
Target:  5'- -cACGCUCGUGcgCCGCgaGGCCGCGcCg -3'
miRNA:   3'- ucUGCGAGUACaaGGUG--CCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 83041 0.75 0.378806
Target:  5'- cGGcCGCUaGUGcgCUugGGCCGCGGCg -3'
miRNA:   3'- -UCuGCGAgUACaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 31234 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.