miRNA display CGI


Results 21 - 40 of 270 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 31234 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 89276 0.74 0.42161
Target:  5'- cGACGCU---GUUUCGCGcGCCGCGGCc -3'
miRNA:   3'- uCUGCGAguaCAAGGUGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 105055 0.74 0.42161
Target:  5'- uGGGCGCgggCGUGUgguagUCCccggGCGGCaCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUACA-----AGG----UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2242 0.74 0.42161
Target:  5'- uGGGCGCgggCGUGUgguagUCCccggGCGGCaCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUACA-----AGG----UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73472 0.74 0.429619
Target:  5'- uGGGCGCaugucucgaaccuUCAUGgcggCCGCGGUgGCGGCg -3'
miRNA:   3'- -UCUGCG-------------AGUACaa--GGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 118881 0.74 0.430514
Target:  5'- cGGGCGCUCGgugcacgGggCCGgGGCCGgGGCc -3'
miRNA:   3'- -UCUGCGAGUa------CaaGGUgCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 93920 0.74 0.439529
Target:  5'- gAGACGCUCGacUGcgugaUCACGGgCGCGACg -3'
miRNA:   3'- -UCUGCGAGU--ACaa---GGUGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73325 0.73 0.448649
Target:  5'- cGGACGCcgacgaccUCAUGUUcgaCCAUGGCCaggGCGACc -3'
miRNA:   3'- -UCUGCG--------AGUACAA---GGUGCCGG---CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 3216 0.73 0.448649
Target:  5'- cGGCGCaCGUGccUCCGCGccGCCGCGGCu -3'
miRNA:   3'- uCUGCGaGUACa-AGGUGC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 82885 0.73 0.448649
Target:  5'- cGGGCGCgccgCAgccaagCCGCGGCgCGCGGCg -3'
miRNA:   3'- -UCUGCGa---GUacaa--GGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70412 0.73 0.448649
Target:  5'- cGGAC-CUCGUGggcUgCACGGCCGCGuCg -3'
miRNA:   3'- -UCUGcGAGUACa--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 102535 0.73 0.448649
Target:  5'- cAGcCGCUcCGUGUcggCCgcgacgGCGGCCGCGACu -3'
miRNA:   3'- -UCuGCGA-GUACAa--GG------UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 120102 0.73 0.456021
Target:  5'- uGGCGCUCGcacagcucgCCcgGCGGCCGCGGCu -3'
miRNA:   3'- uCUGCGAGUacaa-----GG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 131503 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 28690 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 38963 0.73 0.47662
Target:  5'- -aGCGC-CAUGg-CgGCGGCCGCGGCg -3'
miRNA:   3'- ucUGCGaGUACaaGgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 30261 0.73 0.47662
Target:  5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3'
miRNA:   3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 133074 0.73 0.47662
Target:  5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3'
miRNA:   3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 31900 0.73 0.47662
Target:  5'- cGGAUGCcgccgCAgaucacggCCGCGGCCGCGGCu -3'
miRNA:   3'- -UCUGCGa----GUacaa----GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 36339 0.73 0.47662
Target:  5'- ---aGCUCGUG--CCGCGcGCCGCGGCg -3'
miRNA:   3'- ucugCGAGUACaaGGUGC-CGGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.