miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 9836 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 12356 0.68 0.73786
Target:  5'- uGGGCcugGCUCGggagcgUCgGCGGCUGCGGCc -3'
miRNA:   3'- -UCUG---CGAGUaca---AGgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 12554 0.66 0.860386
Target:  5'- gGGACGCagGUGcgcaacgggcgCCGCGuaCGCGGCg -3'
miRNA:   3'- -UCUGCGagUACaa---------GGUGCcgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 13121 0.66 0.854175
Target:  5'- gGGGCGCgCGggcgGcgCCGCGccgccuGCCGCGGCc -3'
miRNA:   3'- -UCUGCGaGUa---CaaGGUGC------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 13666 0.68 0.757277
Target:  5'- cGGCGCg-GUGUggaaCCACGaGCCGCG-Cg -3'
miRNA:   3'- uCUGCGagUACAa---GGUGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 13921 0.77 0.281857
Target:  5'- gGGGCGCUCG-GUgCCGC-GCCGCGGCa -3'
miRNA:   3'- -UCUGCGAGUaCAaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 13935 0.69 0.718072
Target:  5'- cGACgGCgUCAUGcgcgagCUGCGGCUGCGGCc -3'
miRNA:   3'- uCUG-CG-AGUACaa----GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 14034 0.66 0.854175
Target:  5'- gAGGCGCUgGUcggCCGCGaGCCGCu-- -3'
miRNA:   3'- -UCUGCGAgUAcaaGGUGC-CGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 14364 0.84 0.099932
Target:  5'- cGACGCUCGcagaugCCACGGCCGCGGCc -3'
miRNA:   3'- uCUGCGAGUacaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 14446 0.72 0.505429
Target:  5'- cGGCGC-CGgggUgCGCGGCCGCGGCc -3'
miRNA:   3'- uCUGCGaGUacaAgGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 14641 0.66 0.838086
Target:  5'- cGGCGCUCGcGcgCCGCucGCUGCGAg -3'
miRNA:   3'- uCUGCGAGUaCaaGGUGc-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 15105 0.66 0.869452
Target:  5'- -cGCGCUCAUGc-UgACGGCCcugacgGCGGCg -3'
miRNA:   3'- ucUGCGAGUACaaGgUGCCGG------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 15558 0.67 0.812558
Target:  5'- -cGCGCggcCGUcGggCCGCGGCCGCcGCu -3'
miRNA:   3'- ucUGCGa--GUA-CaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 18229 0.69 0.706051
Target:  5'- cGGCGgUCGUGcgcgcggguggaUCCAagaUGGCCGCGACc -3'
miRNA:   3'- uCUGCgAGUACa-----------AGGU---GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 18784 0.68 0.757277
Target:  5'- cGACaGCgCGaGcUCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUG-CGaGUaCaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 18926 0.7 0.626399
Target:  5'- uAGugGCagGUGUcuUCCAgCGccGCCGCGGCg -3'
miRNA:   3'- -UCugCGagUACA--AGGU-GC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 19312 0.67 0.821243
Target:  5'- -aGCGCgg-----CCGCGGCCGUGGCu -3'
miRNA:   3'- ucUGCGaguacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 20449 0.69 0.718072
Target:  5'- cGGCGCggaagGcgUCCAgcaGGCCGCGGCg -3'
miRNA:   3'- uCUGCGagua-Ca-AGGUg--CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 20597 0.66 0.854175
Target:  5'- gGGGCGCaguUCAcuuugaaugUGUUCC-CGcGCCGCGcCg -3'
miRNA:   3'- -UCUGCG---AGU---------ACAAGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 21720 0.69 0.677678
Target:  5'- uGGACGCggCGccguUGUUCCccccgacgcuacGCuGCCGCGACg -3'
miRNA:   3'- -UCUGCGa-GU----ACAAGG------------UGcCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.