miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 124936 0.68 0.728008
Target:  5'- cGGGCGCgcccUGggCCcgGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGagu-ACaaGG--UGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 122027 0.69 0.697986
Target:  5'- cGGCGCcgccCGcGcgCCcCGGCCGCGACa -3'
miRNA:   3'- uCUGCGa---GUaCaaGGuGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 121970 0.69 0.696975
Target:  5'- cGGugGCgugaacugCGUGgcugCCAgcagcccaaccgcCGGCCGCGGCa -3'
miRNA:   3'- -UCugCGa-------GUACaa--GGU-------------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 120743 0.73 0.480416
Target:  5'- cAGAgGCUCGgucgccccugcaagGccaCCACGGCCGCGGCc -3'
miRNA:   3'- -UCUgCGAGUa-------------Caa-GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 120120 0.66 0.838086
Target:  5'- cGGCGaCUCAag--CCAUuGCCGCGACc -3'
miRNA:   3'- uCUGC-GAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 120102 0.73 0.456021
Target:  5'- uGGCGCUCGcacagcucgCCcgGCGGCCGCGGCu -3'
miRNA:   3'- uCUGCGAGUacaa-----GG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119556 0.66 0.857297
Target:  5'- gGGGCGCgcggccagacucugCGggcagCgGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa-------------GUacaa-GgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119201 0.66 0.838086
Target:  5'- uGGCgaGCUCGUcGgcgCCGCGGCCaccgcgggGCGGCg -3'
miRNA:   3'- uCUG--CGAGUA-Caa-GGUGCCGG--------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119141 0.7 0.636678
Target:  5'- uGGCgaGCUCGUcGgcgCCGCGGCCGCcGCg -3'
miRNA:   3'- uCUG--CGAGUA-Caa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 119079 0.72 0.515199
Target:  5'- gAGGCGCccagCAgagGcgCCGCGGCCGCcGCg -3'
miRNA:   3'- -UCUGCGa---GUa--CaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 118881 0.74 0.430514
Target:  5'- cGGGCGCUCGgugcacgGggCCGgGGCCGgGGCc -3'
miRNA:   3'- -UCUGCGAGUa------CaaGGUgCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 117021 0.68 0.757277
Target:  5'- uGGGCGCUCcUGUcugCC-CGGCgGgGGCu -3'
miRNA:   3'- -UCUGCGAGuACAa--GGuGCCGgCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 116868 0.71 0.585401
Target:  5'- cGGACGCccuuaaaaAUGUagccgcgCCGCGGUCGCGGCc -3'
miRNA:   3'- -UCUGCGag------UACAa------GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 116668 0.67 0.794699
Target:  5'- uGGugGCcugCGUGUgggUCCggcgcuGCGGgCGCGGCa -3'
miRNA:   3'- -UCugCGa--GUACA---AGG------UGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 116407 0.68 0.74762
Target:  5'- cGGCGCUC-UGggCCcCgGGCCGCGcGCu -3'
miRNA:   3'- uCUGCGAGuACaaGGuG-CCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 116157 0.7 0.646955
Target:  5'- gAGGCGCUggcggccgCggGcgCCGCGGCCGCG-Cu -3'
miRNA:   3'- -UCUGCGA--------GuaCaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 115819 0.8 0.176915
Target:  5'- cGGCGCUUgcGUUaacagCCACGGCCGCGGCc -3'
miRNA:   3'- uCUGCGAGuaCAA-----GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 113098 0.69 0.705045
Target:  5'- gAGAUGUauacuUCAUGcgcacgcugugcgcUUCCACGGUCGcCGGCg -3'
miRNA:   3'- -UCUGCG-----AGUAC--------------AAGGUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 112649 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 112276 0.66 0.846229
Target:  5'- cGACGaagcCGUGca-CACGGCCGCGuCg -3'
miRNA:   3'- uCUGCga--GUACaagGUGCCGGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.