miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 134477 0.67 0.781841
Target:  5'- uAGGCGCggccaacgaagugCAcggguguagugUGggCCguGCGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa------------GU-----------ACaaGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134233 0.69 0.697986
Target:  5'- cGGCGC-CGgcgGgcggcggCCgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUa--Caa-----GG-UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134106 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 134047 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 133504 0.7 0.646955
Target:  5'- cAGGCGCaCGUGUaccugcgcgCCGCGgugcuGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGUACAa--------GGUGC-----CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 133074 0.73 0.47662
Target:  5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3'
miRNA:   3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 132912 1.08 0.002287
Target:  5'- gAGACGCUCAUGUUCCACGGCCGCGACc -3'
miRNA:   3'- -UCUGCGAGUACAAGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 132550 0.68 0.766823
Target:  5'- cGGCggGCUCGcGU---GCGGCCGCGGCg -3'
miRNA:   3'- uCUG--CGAGUaCAaggUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 132010 0.67 0.829755
Target:  5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 131503 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130775 0.7 0.636678
Target:  5'- -cGCGCUCgcggucgcgGUGgaggcggCCGCGGCCGgGGCg -3'
miRNA:   3'- ucUGCGAG---------UACaa-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 130744 0.78 0.26248
Target:  5'- aGGACGCggaCA-GcgCCugGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUaCaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130506 0.66 0.838086
Target:  5'- cGGugGCUCcUGcccUUCUACGuggucccagagcGCUGCGACg -3'
miRNA:   3'- -UCugCGAGuAC---AAGGUGC------------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130154 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 130070 0.71 0.554983
Target:  5'- cGACGCgUCGccgUCCugGGCCGCGcCc -3'
miRNA:   3'- uCUGCG-AGUacaAGGugCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 129767 0.66 0.853389
Target:  5'- cGGcCGCUCGgaccgccggagccUGggCC-CGGCCGCGcCg -3'
miRNA:   3'- -UCuGCGAGU-------------ACaaGGuGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 128619 0.67 0.820382
Target:  5'- -cGCGCUucuaCGUGUUCCaggcugaGCGcGCCgGCGACg -3'
miRNA:   3'- ucUGCGA----GUACAAGG-------UGC-CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 128018 0.66 0.861918
Target:  5'- --cUGCUCAcGggCCAggaggagccCGGCCGUGGCg -3'
miRNA:   3'- ucuGCGAGUaCaaGGU---------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 125535 0.71 0.565077
Target:  5'- cGGGCGCagcuacggUCGUcc-CCGCGGCUGCGGCu -3'
miRNA:   3'- -UCUGCG--------AGUAcaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 125316 0.67 0.829755
Target:  5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3'
miRNA:   3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.