Results 61 - 80 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 119201 | 0.66 | 0.838086 |
Target: 5'- uGGCgaGCUCGUcGgcgCCGCGGCCaccgcgggGCGGCg -3' miRNA: 3'- uCUG--CGAGUA-Caa-GGUGCCGG--------CGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 64434 | 0.66 | 0.838086 |
Target: 5'- cGGCGCgUCGUagUCgGCGGCCaCGGCc -3' miRNA: 3'- uCUGCG-AGUAcaAGgUGCCGGcGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 14641 | 0.66 | 0.838086 |
Target: 5'- cGGCGCUCGcGcgCCGCucGCUGCGAg -3' miRNA: 3'- uCUGCGAGUaCaaGGUGc-CGGCGCUg -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 102918 | 0.66 | 0.834776 |
Target: 5'- cGACGCcgCGUGcgccuggacggcgUCCAaGGCCGCGGu -3' miRNA: 3'- uCUGCGa-GUACa------------AGGUgCCGGCGCUg -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 100648 | 0.67 | 0.829755 |
Target: 5'- cGGCGC-CA-GggCCGCGcuGCUGCGGCg -3' miRNA: 3'- uCUGCGaGUaCaaGGUGC--CGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 132010 | 0.67 | 0.829755 |
Target: 5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3' miRNA: 3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 106680 | 0.67 | 0.829755 |
Target: 5'- cGGCGCgUCGUG--CCACGGCgGCcauaGGCa -3' miRNA: 3'- uCUGCG-AGUACaaGGUGCCGgCG----CUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 47557 | 0.67 | 0.829755 |
Target: 5'- cGGGCGCggg-GagCCcgGCGGCCGCGcACg -3' miRNA: 3'- -UCUGCGaguaCaaGG--UGCCGGCGC-UG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 28170 | 0.67 | 0.829755 |
Target: 5'- gAGGCGC-CGUuggGUUaCCugGCGGCCGCG-Cg -3' miRNA: 3'- -UCUGCGaGUA---CAA-GG--UGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 29197 | 0.67 | 0.829755 |
Target: 5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3' miRNA: 3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 99445 | 0.67 | 0.829755 |
Target: 5'- cGGCGcCUCc---UCCACGGCCGCcaGCa -3' miRNA: 3'- uCUGC-GAGuacaAGGUGCCGGCGc-UG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 51899 | 0.67 | 0.829755 |
Target: 5'- -cGCGCUUucgGccgCCGCcccGGCCGCGGCg -3' miRNA: 3'- ucUGCGAGua-Caa-GGUG---CCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 125316 | 0.67 | 0.829755 |
Target: 5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3' miRNA: 3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 22503 | 0.67 | 0.829755 |
Target: 5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3' miRNA: 3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 44900 | 0.67 | 0.829755 |
Target: 5'- -aGCGCgUCAcag-CCGCGGCgGCGGCc -3' miRNA: 3'- ucUGCG-AGUacaaGGUGCCGgCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 60626 | 0.67 | 0.82722 |
Target: 5'- uGACGUUgaagacCAUGUUCagcacgagggugcgCGCGGCCGCGuCc -3' miRNA: 3'- uCUGCGA------GUACAAG--------------GUGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 19312 | 0.67 | 0.821243 |
Target: 5'- -aGCGCgg-----CCGCGGCCGUGGCu -3' miRNA: 3'- ucUGCGaguacaaGGUGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 47206 | 0.67 | 0.821243 |
Target: 5'- -cACGCUCAccgcgUgCGCGGCCGCGcCc -3' miRNA: 3'- ucUGCGAGUaca--AgGUGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 70564 | 0.67 | 0.821243 |
Target: 5'- -cGCGCUCaAUGccCCGCGGCC-CGAg -3' miRNA: 3'- ucUGCGAG-UACaaGGUGCCGGcGCUg -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 5467 | 0.67 | 0.821243 |
Target: 5'- cGGcCGCUC----UCUGCGGCgGCGGCa -3' miRNA: 3'- -UCuGCGAGuacaAGGUGCCGgCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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