miRNA display CGI


Results 81 - 100 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 47206 0.67 0.821243
Target:  5'- -cACGCUCAccgcgUgCGCGGCCGCGcCc -3'
miRNA:   3'- ucUGCGAGUaca--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 75770 0.67 0.821243
Target:  5'- -cGCGCggGUGaa-CACGGCCGCGGg -3'
miRNA:   3'- ucUGCGagUACaagGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 19312 0.67 0.821243
Target:  5'- -aGCGCgg-----CCGCGGCCGUGGCu -3'
miRNA:   3'- ucUGCGaguacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 128619 0.67 0.820382
Target:  5'- -cGCGCUucuaCGUGUUCCaggcugaGCGcGCCgGCGACg -3'
miRNA:   3'- ucUGCGA----GUACAAGG-------UGC-CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 105351 0.67 0.815181
Target:  5'- gGGGCGCUCGcg-UCCAcaaacggccagagccCGGCCGCcagggccGACa -3'
miRNA:   3'- -UCUGCGAGUacaAGGU---------------GCCGGCG-------CUG- -5'
6345 3' -56.7 NC_001847.1 + 63862 0.67 0.812558
Target:  5'- gGGGgGCgCAUGcgCgACGGCUGgGACg -3'
miRNA:   3'- -UCUgCGaGUACaaGgUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 32134 0.67 0.812558
Target:  5'- cGGCGCUgGgcgccgCCGCGcccgcgcacGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUacaa--GGUGC---------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5614 0.67 0.812558
Target:  5'- uAGACGggCGUGggcgCCGCGGucCCGCGcGCg -3'
miRNA:   3'- -UCUGCgaGUACaa--GGUGCC--GGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 78334 0.67 0.812558
Target:  5'- cGGGCccgGCUUggGcgCCGCGGCgGCGAa -3'
miRNA:   3'- -UCUG---CGAGuaCaaGGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 63663 0.67 0.812558
Target:  5'- aAGAucUGCUCAUGc-UCGCGGCCGCc-- -3'
miRNA:   3'- -UCU--GCGAGUACaaGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 77894 0.67 0.812558
Target:  5'- -cGCGCUC-UGcgCgGCGGCgGUGGCg -3'
miRNA:   3'- ucUGCGAGuACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 15558 0.67 0.812558
Target:  5'- -cGCGCggcCGUcGggCCGCGGCCGCcGCu -3'
miRNA:   3'- ucUGCGa--GUA-CaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 74386 0.67 0.803706
Target:  5'- gAGGCGCUgGgGgaCCgcGCGGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAgUaCaaGG--UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 88654 0.67 0.803706
Target:  5'- -aACGCUCGg---CCAC-GCUGCGACg -3'
miRNA:   3'- ucUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 93618 0.67 0.803706
Target:  5'- cAGGUGCUCcgGccggCGCGGCCGCgGACg -3'
miRNA:   3'- -UCUGCGAGuaCaag-GUGCCGGCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 34367 0.67 0.803706
Target:  5'- cGGGCGCUgAUGcggCCgaaacaacgGCGGCCGCcGCc -3'
miRNA:   3'- -UCUGCGAgUACaa-GG---------UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 104331 0.67 0.803706
Target:  5'- cGcCGC-CGUGUuugCCGCGGCgGCaGACg -3'
miRNA:   3'- uCuGCGaGUACAa--GGUGCCGgCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 106230 0.67 0.803706
Target:  5'- uGGCGCUCGccUGcacggcgUCCcaaacgGCGGCCGCGuGCu -3'
miRNA:   3'- uCUGCGAGU--ACa------AGG------UGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 34548 0.67 0.803706
Target:  5'- cGGGCGCUUG-GggCCACaGGCCGCc-- -3'
miRNA:   3'- -UCUGCGAGUaCaaGGUG-CCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 102813 0.67 0.794699
Target:  5'- cAGGCccGCgaucgCGUGUUCCAgCGGgucccguuCCGCGGCg -3'
miRNA:   3'- -UCUG--CGa----GUACAAGGU-GCC--------GGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.