miRNA display CGI


Results 61 - 80 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 32263 0.7 0.636678
Target:  5'- cAGACGCgugCGUGgcucgcgccgUCCGCGuGgCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUACa---------AGGUGC-CgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 65423 0.7 0.657219
Target:  5'- uGAUGCUCcgGgaggcggcagCCGCGcGCCGCGGa -3'
miRNA:   3'- uCUGCGAGuaCaa--------GGUGC-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 134106 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 134047 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70412 0.73 0.448649
Target:  5'- cGGAC-CUCGUGggcUgCACGGCCGCGuCg -3'
miRNA:   3'- -UCUGcGAGUACa--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 131503 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5537 0.73 0.489967
Target:  5'- cGACGCUCGUGa-CgGCGGCCcagucgucgccguccGCGACg -3'
miRNA:   3'- uCUGCGAGUACaaGgUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87278 0.72 0.525045
Target:  5'- cGGACGUgcgCGccgacGgcCCGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUa----CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 29231 0.71 0.563054
Target:  5'- cAGACGauccgccacugCAUGgccCCGCGGCCGCGcACg -3'
miRNA:   3'- -UCUGCga---------GUACaa-GGUGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 33484 0.7 0.616123
Target:  5'- cGAgGCg-AUG-UCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUgCGagUACaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 48612 0.68 0.776248
Target:  5'- -cGCGCUCGgccgugccgaUGUgaacgCCGCGGCgGCGGg -3'
miRNA:   3'- ucUGCGAGU----------ACAa----GGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 56786 0.68 0.776248
Target:  5'- cGGcACGCUCGaggGgcugUUCGCcGCCGCGGCg -3'
miRNA:   3'- -UC-UGCGAGUa--Ca---AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 21720 0.69 0.677678
Target:  5'- uGGACGCggCGccguUGUUCCccccgacgcuacGCuGCCGCGACg -3'
miRNA:   3'- -UCUGCGa-GU----ACAAGG------------UGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 44388 0.69 0.678698
Target:  5'- aGGGCGCUCccGcucccggggcccggCCACGcGCCGCGAg -3'
miRNA:   3'- -UCUGCGAGuaCaa------------GGUGC-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 18229 0.69 0.706051
Target:  5'- cGGCGgUCGUGcgcgcggguggaUCCAagaUGGCCGCGACc -3'
miRNA:   3'- uCUGCgAGUACa-----------AGGU---GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 13935 0.69 0.718072
Target:  5'- cGACgGCgUCAUGcgcgagCUGCGGCUGCGGCc -3'
miRNA:   3'- uCUG-CG-AGUACaa----GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 62065 0.69 0.718072
Target:  5'- cGGAUGCgcgCGUcgacUUCCGCGcCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUAc---AAGGUGCcGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 37206 0.68 0.728008
Target:  5'- gAGGCGC-CcgGUgCCGCuuGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGaGuaCAaGGUG--CCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 112649 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 27316 0.68 0.766823
Target:  5'- cGGCGggCGUG-UCCACGGCaaucugccggggCGUGACg -3'
miRNA:   3'- uCUGCgaGUACaAGGUGCCG------------GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.