miRNA display CGI


Results 61 - 80 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 105042 0.73 0.328321
Target:  5'- aG-CGCCGCgGcgCUgggCGCGGGCGUGUg -3'
miRNA:   3'- gCaGUGGCGgCa-GAa--GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 48686 0.73 0.328321
Target:  5'- cCGUCGgCGCCGUCggCGUccaGGCaGCGCg -3'
miRNA:   3'- -GCAGUgGCGGCAGaaGCGc--CCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 53709 0.73 0.335545
Target:  5'- gCG-CGCCGCCGgcggC-UCGCGgggcggaucGGCGCGCg -3'
miRNA:   3'- -GCaGUGGCGGCa---GaAGCGC---------CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 31134 0.73 0.342145
Target:  5'- -cUCGCUGUCGUuucugcggcuggcCUUCGCGGGCgGCGUc -3'
miRNA:   3'- gcAGUGGCGGCA-------------GAAGCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 70709 0.73 0.342884
Target:  5'- cCGUgGCCGCCGaCUacgaCGCGccggcaguGGCGCGCg -3'
miRNA:   3'- -GCAgUGGCGGCaGAa---GCGC--------CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 32842 0.73 0.342884
Target:  5'- gCGUgGCCGCCGagacCGCGGcgcucGCGCGCg -3'
miRNA:   3'- -GCAgUGGCGGCagaaGCGCC-----CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 105217 0.73 0.342884
Target:  5'- ---aACCGCCcacc-CGCGGGCGCGCg -3'
miRNA:   3'- gcagUGGCGGcagaaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 98354 0.73 0.350338
Target:  5'- gCGgCAaaaCGCCccaaaGUCcgcgUCGCGGGCGCGCu -3'
miRNA:   3'- -GCaGUg--GCGG-----CAGa---AGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 82788 0.72 0.357906
Target:  5'- cCGUUGCUGCCGUUgauaaucUCGCGGaGCGCu- -3'
miRNA:   3'- -GCAGUGGCGGCAGa------AGCGCC-CGCGcg -5'
6346 3' -60.6 NC_001847.1 + 10195 0.72 0.357906
Target:  5'- gCG-CGCCGCCGcCgcCGCcgggcccaGGGCGCGCc -3'
miRNA:   3'- -GCaGUGGCGGCaGaaGCG--------CCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 113008 0.72 0.357906
Target:  5'- gCG-CGCCGCCGcCgcCGCcgggcccaGGGCGCGCc -3'
miRNA:   3'- -GCaGUGGCGGCaGaaGCG--------CCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 59115 0.72 0.357906
Target:  5'- uCGUCGCCGCCGcCgcUC-CGGcCGCGCg -3'
miRNA:   3'- -GCAGUGGCGGCaGa-AGcGCCcGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 131099 0.72 0.357906
Target:  5'- -uUCACCGUgGaUCUcUCG-GGGCGCGCg -3'
miRNA:   3'- gcAGUGGCGgC-AGA-AGCgCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 73127 0.72 0.363272
Target:  5'- gGUaGCCGCCGUgcUCGCGgaccuggaggaggcGGCGCGCc -3'
miRNA:   3'- gCAgUGGCGGCAgaAGCGC--------------CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 80459 0.72 0.365589
Target:  5'- gCGggCGCCGCCGcCgcCGuCGGGCcGCGCu -3'
miRNA:   3'- -GCa-GUGGCGGCaGaaGC-GCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 13438 0.72 0.373385
Target:  5'- gGcCugCGCUGgCUguaucuaGCGGGCGCGCa -3'
miRNA:   3'- gCaGugGCGGCaGAag-----CGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 67200 0.72 0.373385
Target:  5'- aG-CACaCGCCGUgcCgagCgGCGGGCGCGCg -3'
miRNA:   3'- gCaGUG-GCGGCA--Gaa-G-CGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 65451 0.72 0.373385
Target:  5'- aG-C-CCGcCCGUgUagGCGGGCGCGCg -3'
miRNA:   3'- gCaGuGGC-GGCAgAagCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 73213 0.72 0.376534
Target:  5'- gCGcCGCCGCUgacgcggaggaggggGgcggCggCGCGGGCGCGCu -3'
miRNA:   3'- -GCaGUGGCGG---------------Ca---GaaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 63207 0.72 0.381292
Target:  5'- gCGgcgCGgCGCCGUUUaCGCGuGCGCGCg -3'
miRNA:   3'- -GCa--GUgGCGGCAGAaGCGCcCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.