miRNA display CGI


Results 41 - 60 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 69386 0.74 0.287407
Target:  5'- gCGguggCGCUGCCGgcggcCUUUGCGGGCccgGCGCu -3'
miRNA:   3'- -GCa---GUGGCGGCa----GAAGCGCCCG---CGCG- -5'
6346 3' -60.6 NC_001847.1 + 41987 0.74 0.287407
Target:  5'- gCGUCGCgGCCGcCUUuccCGCGGGgGgCGCc -3'
miRNA:   3'- -GCAGUGgCGGCaGAA---GCGCCCgC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 67172 0.74 0.293938
Target:  5'- ---aGCCGCCGg--UCGacaaGGGCGCGCa -3'
miRNA:   3'- gcagUGGCGGCagaAGCg---CCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 61247 0.74 0.293938
Target:  5'- aCGUaCGCaaCGCCGUCcgcgucCGCGGcGCGCGCg -3'
miRNA:   3'- -GCA-GUG--GCGGCAGaa----GCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 60030 0.74 0.293938
Target:  5'- gCGU-GCCGUCGgccUCUUCGuCGGGCGCGa -3'
miRNA:   3'- -GCAgUGGCGGC---AGAAGC-GCCCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 41150 0.74 0.299913
Target:  5'- uCGUCgaACCGCgagugagCGcgCggCGCGGGCGCGCg -3'
miRNA:   3'- -GCAG--UGGCG-------GCa-GaaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 98740 0.74 0.300583
Target:  5'- gGUCugCGCgcgagugcacCGUCgcCGCGGcGCGCGCu -3'
miRNA:   3'- gCAGugGCG----------GCAGaaGCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 107849 0.74 0.300583
Target:  5'- cCGgCACCGCCGUCcucUCGCccGGCGgGCa -3'
miRNA:   3'- -GCaGUGGCGGCAGa--AGCGc-CCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 61294 0.74 0.300583
Target:  5'- gCG-CACCGCggcggCGUUUUuaugCGCGGGUGCGCg -3'
miRNA:   3'- -GCaGUGGCG-----GCAGAA----GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 23465 0.74 0.300583
Target:  5'- gCGUcCGCCGCC-UCggccaUCGCGcucGGCGCGCg -3'
miRNA:   3'- -GCA-GUGGCGGcAGa----AGCGC---CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 123828 0.74 0.307344
Target:  5'- aGcCGcCCGCCGgCcUCgGCGGGCGCGCc -3'
miRNA:   3'- gCaGU-GGCGGCaGaAG-CGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 132967 0.73 0.31422
Target:  5'- --aCGCCGCCcaggCggCGCGGGCGCuGCg -3'
miRNA:   3'- gcaGUGGCGGca--GaaGCGCCCGCG-CG- -5'
6346 3' -60.6 NC_001847.1 + 3193 0.73 0.31422
Target:  5'- -cUCGCCGCCGUCgccgccaUCGCcGGCGCa- -3'
miRNA:   3'- gcAGUGGCGGCAGa------AGCGcCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 91337 0.73 0.318402
Target:  5'- ---gGCCGCCGUCgcccucgaccggCGCGccGGCGCGCg -3'
miRNA:   3'- gcagUGGCGGCAGaa----------GCGC--CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 51696 0.73 0.319103
Target:  5'- cCGUCGCgCGCCGUCgUCG-GGGUcgaacgcguacuugGCGCg -3'
miRNA:   3'- -GCAGUG-GCGGCAGaAGCgCCCG--------------CGCG- -5'
6346 3' -60.6 NC_001847.1 + 33420 0.73 0.319805
Target:  5'- aCGUgGCCGCCauaaacgggcgcUCggcgUCGCGGGCGuCGCu -3'
miRNA:   3'- -GCAgUGGCGGc-----------AGa---AGCGCCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 37269 0.73 0.321213
Target:  5'- cCG-CGCCGCCGaCUgggaCGCGGGC-CGCc -3'
miRNA:   3'- -GCaGUGGCGGCaGAa---GCGCCCGcGCG- -5'
6346 3' -60.6 NC_001847.1 + 129474 0.73 0.321213
Target:  5'- gGcCGCCGCCGcg--CGCGacGGCGCGCa -3'
miRNA:   3'- gCaGUGGCGGCagaaGCGC--CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 73857 0.73 0.321213
Target:  5'- --aCGCCGCCG-CggugCGCGGGgCGCGUc -3'
miRNA:   3'- gcaGUGGCGGCaGaa--GCGCCC-GCGCG- -5'
6346 3' -60.6 NC_001847.1 + 2229 0.73 0.328321
Target:  5'- aG-CGCCGCgGcgCUgggCGCGGGCGUGUg -3'
miRNA:   3'- gCaGUGGCGgCa-GAa--GCGCCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.