miRNA display CGI


Results 21 - 40 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 81690 0.76 0.212695
Target:  5'- -cUCGCCGCCGUagagCGCcaGGCGCGCg -3'
miRNA:   3'- gcAGUGGCGGCAgaa-GCGc-CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 124310 0.76 0.217794
Target:  5'- aCG-CGCCGCCGUCgcgCGCaGGUGCuGCa -3'
miRNA:   3'- -GCaGUGGCGGCAGaa-GCGcCCGCG-CG- -5'
6346 3' -60.6 NC_001847.1 + 76517 0.76 0.222997
Target:  5'- -uUCGCgGCCuacGUCccCGCGGGCGCGCu -3'
miRNA:   3'- gcAGUGgCGG---CAGaaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 131214 0.76 0.222997
Target:  5'- --cCGCCGCgG-CgccagCGCGGGCGCGCa -3'
miRNA:   3'- gcaGUGGCGgCaGaa---GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 28401 0.76 0.222997
Target:  5'- --cCGCCGCgG-CgccagCGCGGGCGCGCa -3'
miRNA:   3'- gcaGUGGCGgCaGaa---GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 49506 0.76 0.228305
Target:  5'- -aUCGgCGCCG-CUUCGcCGGGCGCGg -3'
miRNA:   3'- gcAGUgGCGGCaGAAGC-GCCCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 78670 0.76 0.228305
Target:  5'- gCGUCGCCGgCGUgCgcaCGCGGGCGCu- -3'
miRNA:   3'- -GCAGUGGCgGCA-Gaa-GCGCCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 83706 0.76 0.23372
Target:  5'- uGUCGCCGUCcauGUCgcgCGCGGGCG-GCu -3'
miRNA:   3'- gCAGUGGCGG---CAGaa-GCGCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 87250 0.75 0.239243
Target:  5'- cCGgcugCGCC-CCGggcgCGCGGGCGCGCg -3'
miRNA:   3'- -GCa---GUGGcGGCagaaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 30776 0.75 0.250614
Target:  5'- aG-CGCCGCgCGUCU--GCGGGCGCGg -3'
miRNA:   3'- gCaGUGGCG-GCAGAagCGCCCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 15290 0.75 0.256465
Target:  5'- gGUaCGCCuGCUGgCUgcgCGCGGGCGUGCg -3'
miRNA:   3'- gCA-GUGG-CGGCaGAa--GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 119902 0.75 0.256465
Target:  5'- gCGUgGCCGCCGcCgcCGCcGGCGCGUa -3'
miRNA:   3'- -GCAgUGGCGGCaGaaGCGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 34294 0.75 0.262428
Target:  5'- gCGcUCGCgGCCGUCagCGaggcuuCGGGCGCGCu -3'
miRNA:   3'- -GC-AGUGgCGGCAGaaGC------GCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 87075 0.75 0.262428
Target:  5'- gCGUgCGCCcCCGcCuUUCGCGGcGCGCGCg -3'
miRNA:   3'- -GCA-GUGGcGGCaG-AAGCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 83478 0.75 0.262428
Target:  5'- gCGUaCGCCGCCcug-UUGCGGGCGCaGCg -3'
miRNA:   3'- -GCA-GUGGCGGcagaAGCGCCCGCG-CG- -5'
6346 3' -60.6 NC_001847.1 + 18705 0.75 0.268503
Target:  5'- gCGUCACCGCCaG-CgcCGCGGGgaGCGCc -3'
miRNA:   3'- -GCAGUGGCGG-CaGaaGCGCCCg-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 60483 0.75 0.268503
Target:  5'- uGgCGCCGCCG-CUUUGUGcGCGCGCg -3'
miRNA:   3'- gCaGUGGCGGCaGAAGCGCcCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 75397 0.74 0.274691
Target:  5'- gCGUCGCCGCCG-CgagGCGGGCauCGCg -3'
miRNA:   3'- -GCAGUGGCGGCaGaagCGCCCGc-GCG- -5'
6346 3' -60.6 NC_001847.1 + 106287 0.74 0.280992
Target:  5'- gCGcCGCCGgCGUCgcgCGCGcGGCcGCGCg -3'
miRNA:   3'- -GCaGUGGCgGCAGaa-GCGC-CCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 127057 0.74 0.285471
Target:  5'- gCGUCGCCgaucucGCCGcggcggugccccccUCUgcgCGCGGGCcGCGCg -3'
miRNA:   3'- -GCAGUGG------CGGC--------------AGAa--GCGCCCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.