Results 21 - 40 of 521 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6346 | 3' | -60.6 | NC_001847.1 | + | 67172 | 0.74 | 0.293938 |
Target: 5'- ---aGCCGCCGg--UCGacaaGGGCGCGCa -3' miRNA: 3'- gcagUGGCGGCagaAGCg---CCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 69386 | 0.74 | 0.287407 |
Target: 5'- gCGguggCGCUGCCGgcggcCUUUGCGGGCccgGCGCu -3' miRNA: 3'- -GCa---GUGGCGGCa----GAAGCGCCCG---CGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 131214 | 0.76 | 0.222997 |
Target: 5'- --cCGCCGCgG-CgccagCGCGGGCGCGCa -3' miRNA: 3'- gcaGUGGCGgCaGaa---GCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 43497 | 0.78 | 0.175502 |
Target: 5'- cCG-CGCCGCCGUCgaUCGCuacuGGGCgGCGCg -3' miRNA: 3'- -GCaGUGGCGGCAGa-AGCG----CCCG-CGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 59115 | 0.72 | 0.357906 |
Target: 5'- uCGUCGCCGCCGcCgcUC-CGGcCGCGCg -3' miRNA: 3'- -GCAGUGGCGGCaGa-AGcGCCcGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 73857 | 0.73 | 0.321213 |
Target: 5'- --aCGCCGCCG-CggugCGCGGGgCGCGUc -3' miRNA: 3'- gcaGUGGCGGCaGaa--GCGCCC-GCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 87075 | 0.75 | 0.262428 |
Target: 5'- gCGUgCGCCcCCGcCuUUCGCGGcGCGCGCg -3' miRNA: 3'- -GCA-GUGGcGGCaG-AAGCGCC-CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 13111 | 0.78 | 0.175502 |
Target: 5'- uGUCGCgGCCGgggcgCGCGGGCgGCGCc -3' miRNA: 3'- gCAGUGgCGGCagaa-GCGCCCG-CGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 33420 | 0.73 | 0.319805 |
Target: 5'- aCGUgGCCGCCauaaacgggcgcUCggcgUCGCGGGCGuCGCu -3' miRNA: 3'- -GCAgUGGCGGc-----------AGa---AGCGCCCGC-GCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 42052 | 0.79 | 0.140678 |
Target: 5'- --cCGCC-CCG-CUUUGCGGGCGCGCg -3' miRNA: 3'- gcaGUGGcGGCaGAAGCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 60483 | 0.75 | 0.268503 |
Target: 5'- uGgCGCCGCCG-CUUUGUGcGCGCGCg -3' miRNA: 3'- gCaGUGGCGGCaGAAGCGCcCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 41150 | 0.74 | 0.299913 |
Target: 5'- uCGUCgaACCGCgagugagCGcgCggCGCGGGCGCGCg -3' miRNA: 3'- -GCAG--UGGCG-------GCa-GaaGCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 119902 | 0.75 | 0.256465 |
Target: 5'- gCGUgGCCGCCGcCgcCGCcGGCGCGUa -3' miRNA: 3'- -GCAgUGGCGGCaGaaGCGcCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 78670 | 0.76 | 0.228305 |
Target: 5'- gCGUCGCCGgCGUgCgcaCGCGGGCGCu- -3' miRNA: 3'- -GCAGUGGCgGCA-Gaa-GCGCCCGCGcg -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 33771 | 0.76 | 0.207699 |
Target: 5'- uGUUGCUGCCGcugcagggCUUCGCGGggcuGCGCGCg -3' miRNA: 3'- gCAGUGGCGGCa-------GAAGCGCC----CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 33885 | 0.77 | 0.179814 |
Target: 5'- aGgCGCCGCCGcgCguggcCGCGGGCGUGCa -3' miRNA: 3'- gCaGUGGCGGCa-Gaa---GCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 67200 | 0.72 | 0.373385 |
Target: 5'- aG-CACaCGCCGUgcCgagCgGCGGGCGCGCg -3' miRNA: 3'- gCaGUG-GCGGCA--Gaa-G-CGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 113008 | 0.72 | 0.357906 |
Target: 5'- gCG-CGCCGCCGcCgcCGCcgggcccaGGGCGCGCc -3' miRNA: 3'- -GCaGUGGCGGCaGaaGCG--------CCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 31134 | 0.73 | 0.342145 |
Target: 5'- -cUCGCUGUCGUuucugcggcuggcCUUCGCGGGCgGCGUc -3' miRNA: 3'- gcAGUGGCGGCA-------------GAAGCGCCCG-CGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 37269 | 0.73 | 0.321213 |
Target: 5'- cCG-CGCCGCCGaCUgggaCGCGGGC-CGCc -3' miRNA: 3'- -GCaGUGGCGGCaGAa---GCGCCCGcGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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