miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 4401 0.79 0.133184
Target:  5'- gGUCGCCGCCGUCgacgccgacgGCGGcgaGCGCGCg -3'
miRNA:   3'- gCAGUGGCGGCAGaag-------CGCC---CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 87075 0.75 0.262428
Target:  5'- gCGUgCGCCcCCGcCuUUCGCGGcGCGCGCg -3'
miRNA:   3'- -GCA-GUGGcGGCaG-AAGCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 69386 0.74 0.287407
Target:  5'- gCGguggCGCUGCCGgcggcCUUUGCGGGCccgGCGCu -3'
miRNA:   3'- -GCa---GUGGCGGCa----GAAGCGCCCG---CGCG- -5'
6346 3' -60.6 NC_001847.1 + 81443 0.67 0.628473
Target:  5'- ---aGCCGCCGgCggCGCGcucGCGCGCg -3'
miRNA:   3'- gcagUGGCGGCaGaaGCGCc--CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 33885 0.77 0.179814
Target:  5'- aGgCGCCGCCGcgCguggcCGCGGGCGUGCa -3'
miRNA:   3'- gCaGUGGCGGCa-Gaa---GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 67512 0.77 0.179814
Target:  5'- aGcCGCCGCCGUCUcCGCcGGCGcCGCc -3'
miRNA:   3'- gCaGUGGCGGCAGAaGCGcCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 33771 0.76 0.207699
Target:  5'- uGUUGCUGCCGcugcagggCUUCGCGGggcuGCGCGCg -3'
miRNA:   3'- gCAGUGGCGGCa-------GAAGCGCC----CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 47847 0.76 0.207699
Target:  5'- aCGUCGCaggagGUCGcgugCUgCGCGGGCGCGCg -3'
miRNA:   3'- -GCAGUGg----CGGCa---GAaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 78670 0.76 0.228305
Target:  5'- gCGUCGCCGgCGUgCgcaCGCGGGCGCu- -3'
miRNA:   3'- -GCAGUGGCgGCA-Gaa-GCGCCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 83478 0.75 0.262428
Target:  5'- gCGUaCGCCGCCcug-UUGCGGGCGCaGCg -3'
miRNA:   3'- -GCA-GUGGCGGcagaAGCGCCCGCG-CG- -5'
6346 3' -60.6 NC_001847.1 + 15290 0.75 0.256465
Target:  5'- gGUaCGCCuGCUGgCUgcgCGCGGGCGUGCg -3'
miRNA:   3'- gCA-GUGG-CGGCaGAa--GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 131214 0.76 0.222997
Target:  5'- --cCGCCGCgG-CgccagCGCGGGCGCGCa -3'
miRNA:   3'- gcaGUGGCGgCaGaa---GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 42052 0.79 0.140678
Target:  5'- --cCGCC-CCG-CUUUGCGGGCGCGCg -3'
miRNA:   3'- gcaGUGGcGGCaGAAGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 119902 0.75 0.256465
Target:  5'- gCGUgGCCGCCGcCgcCGCcGGCGCGUa -3'
miRNA:   3'- -GCAgUGGCGGCaGaaGCGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 13111 0.78 0.175502
Target:  5'- uGUCGCgGCCGgggcgCGCGGGCgGCGCc -3'
miRNA:   3'- gCAGUGgCGGCagaa-GCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 76517 0.76 0.222997
Target:  5'- -uUCGCgGCCuacGUCccCGCGGGCGCGCu -3'
miRNA:   3'- gcAGUGgCGG---CAGaaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 34294 0.75 0.262428
Target:  5'- gCGcUCGCgGCCGUCagCGaggcuuCGGGCGCGCu -3'
miRNA:   3'- -GC-AGUGgCGGCAGaaGC------GCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 60483 0.75 0.268503
Target:  5'- uGgCGCCGCCG-CUUUGUGcGCGCGCg -3'
miRNA:   3'- gCaGUGGCGGCaGAAGCGCcCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 43497 0.78 0.175502
Target:  5'- cCG-CGCCGCCGUCgaUCGCuacuGGGCgGCGCg -3'
miRNA:   3'- -GCaGUGGCGGCAGa-AGCG----CCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 80182 0.77 0.179814
Target:  5'- aGUgCGCCGCCGccUCUgcggGCGGGUGCGCc -3'
miRNA:   3'- gCA-GUGGCGGC--AGAag--CGCCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.