miRNA display CGI


Results 21 - 40 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 3975 0.67 0.677662
Target:  5'- gCGagGgCGCCGggggC-CGGGCGCGCg -3'
miRNA:   3'- -GCagUgGCGGCagaaGcGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 4401 0.79 0.133184
Target:  5'- gGUCGCCGCCGUCgacgccgacgGCGGcgaGCGCGCg -3'
miRNA:   3'- gCAGUGGCGGCAGaag-------CGCC---CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 4950 0.68 0.618614
Target:  5'- cCG-CGCCGcCCGUCUcuUCaggcCGGGCGCccGCg -3'
miRNA:   3'- -GCaGUGGC-GGCAGA--AGc---GCCCGCG--CG- -5'
6346 3' -60.6 NC_001847.1 + 5092 0.67 0.655085
Target:  5'- gCGUCGCCGUCGcCUaggUUGCuagcggcggccgaaGGGCacGCGCu -3'
miRNA:   3'- -GCAGUGGCGGCaGA---AGCG--------------CCCG--CGCG- -5'
6346 3' -60.6 NC_001847.1 + 5192 0.66 0.744835
Target:  5'- --aCAgCGCCG-CgagCGCGGcaaGCGCGCc -3'
miRNA:   3'- gcaGUgGCGGCaGaa-GCGCC---CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 5216 0.67 0.628473
Target:  5'- -cUCGCCGCgG-CggccggCG-GGGCGCGCg -3'
miRNA:   3'- gcAGUGGCGgCaGaa----GCgCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 5656 0.66 0.706819
Target:  5'- cCGUCcagcggauGCgCGCCGUCg-CGCGcGGCG-GCg -3'
miRNA:   3'- -GCAG--------UG-GCGGCAGaaGCGC-CCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 5750 0.68 0.589121
Target:  5'- aCG-CACCGCCGUCc-----GGCGCGCc -3'
miRNA:   3'- -GCaGUGGCGGCAGaagcgcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 5937 0.67 0.632418
Target:  5'- gGUCGCCGCgagcaagcgcgcguaCGUa--CGCGcGCGCGCg -3'
miRNA:   3'- gCAGUGGCG---------------GCAgaaGCGCcCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 8112 0.66 0.725977
Target:  5'- aCGUgGCC-CCGUacaacCGCgGGGCGgGCg -3'
miRNA:   3'- -GCAgUGGcGGCAgaa--GCG-CCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 10043 0.71 0.431017
Target:  5'- -cUCGCCGCCGcgaacgacaUCUUggccgCGCGGGCccaGCGCc -3'
miRNA:   3'- gcAGUGGCGGC---------AGAA-----GCGCCCG---CGCG- -5'
6346 3' -60.6 NC_001847.1 + 10050 0.66 0.687426
Target:  5'- uCGUCACgGCCGaCacgCGCGcGCuGCGCc -3'
miRNA:   3'- -GCAGUGgCGGCaGaa-GCGCcCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 10195 0.72 0.357906
Target:  5'- gCG-CGCCGCCGcCgcCGCcgggcccaGGGCGCGCc -3'
miRNA:   3'- -GCaGUGGCGGCaGaaGCG--------CCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 10670 0.67 0.657053
Target:  5'- cCGUCGCCGgggggcucgcccuCCGg--UCGCgcccGGGCGCGg -3'
miRNA:   3'- -GCAGUGGC-------------GGCagaAGCG----CCCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 11243 0.72 0.397439
Target:  5'- ---aGCCGCCGUUUUcgggaagcuugcCGCGGGCGCu- -3'
miRNA:   3'- gcagUGGCGGCAGAA------------GCGCCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 11526 0.66 0.744835
Target:  5'- aCGUaGCCGCCGggugCUgcguUCGCgucuGGaGUGCGCc -3'
miRNA:   3'- -GCAgUGGCGGCa---GA----AGCG----CC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 11853 0.66 0.706819
Target:  5'- uGgCGCCGCCc----UGCGGGCgGCGCg -3'
miRNA:   3'- gCaGUGGCGGcagaaGCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 11972 0.66 0.706819
Target:  5'- uCGagGCgUGCCGUUggCGgGGGCucGCGCa -3'
miRNA:   3'- -GCagUG-GCGGCAGaaGCgCCCG--CGCG- -5'
6346 3' -60.6 NC_001847.1 + 12797 0.71 0.431017
Target:  5'- --aCGCCGCCcaacgaUCagCGCGuGGCGCGCg -3'
miRNA:   3'- gcaGUGGCGGc-----AGaaGCGC-CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 12905 0.72 0.389311
Target:  5'- gCGgaagCGCgCGCCGUgcCgccgCGgGGGCGCGCg -3'
miRNA:   3'- -GCa---GUG-GCGGCA--Gaa--GCgCCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.