miRNA display CGI


Results 41 - 60 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 73067 0.66 0.725977
Target:  5'- aCG-CGCCGCgGg---CGCGGaagucgacGCGCGCa -3'
miRNA:   3'- -GCaGUGGCGgCagaaGCGCC--------CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 78854 0.66 0.725977
Target:  5'- aGUaGCUGgUGUgcUCGCGGuGCGCGCc -3'
miRNA:   3'- gCAgUGGCgGCAgaAGCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 15313 0.66 0.725977
Target:  5'- gCGUCggggGCCGCgGgCguagCGgGGGCGgGCg -3'
miRNA:   3'- -GCAG----UGGCGgCaGaa--GCgCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 116295 0.66 0.725977
Target:  5'- gCGUgCcCCGCUGaCccgUGCGGcGCGCGCg -3'
miRNA:   3'- -GCA-GuGGCGGCaGaa-GCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 8112 0.66 0.725977
Target:  5'- aCGUgGCC-CCGUacaacCGCgGGGCGgGCg -3'
miRNA:   3'- -GCAgUGGcGGCAgaa--GCG-CCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 122131 0.66 0.725977
Target:  5'- gGUCGCgacgGCCGgcg-CGCaGGGCGcCGCg -3'
miRNA:   3'- gCAGUGg---CGGCagaaGCG-CCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 69942 0.66 0.725977
Target:  5'- -aUCAUgCGCaCGUUggcgucCGCGGGCGCGa -3'
miRNA:   3'- gcAGUG-GCG-GCAGaa----GCGCCCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 72627 0.66 0.725977
Target:  5'- aCGU-GCCGcCCGUgccgcaCUUUGUGGGCGC-Ca -3'
miRNA:   3'- -GCAgUGGC-GGCA------GAAGCGCCCGCGcG- -5'
6346 3' -60.6 NC_001847.1 + 82485 0.66 0.725977
Target:  5'- aCGggGCCGCCGaaggCguaggUCGCGucuGGCGCGg -3'
miRNA:   3'- -GCagUGGCGGCa---Ga----AGCGC---CCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 64847 0.66 0.725026
Target:  5'- ---aGCCGCCcccugcaggacugGUacUUUCGCaGGCGCGCg -3'
miRNA:   3'- gcagUGGCGG-------------CA--GAAGCGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 118632 0.66 0.725026
Target:  5'- aCGUUACCcucuccaccucagGCCGcg--CGCGGGagGCGCa -3'
miRNA:   3'- -GCAGUGG-------------CGGCagaaGCGCCCg-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 93263 0.66 0.725026
Target:  5'- -cUCGCCGCgCGggcCguaUCGCGccgcgaugucggcGGCGCGCa -3'
miRNA:   3'- gcAGUGGCG-GCa--Ga--AGCGC-------------CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 68911 0.66 0.724074
Target:  5'- aG-CGCCGCCGcgcugagguUCggcgcggcggcCGCGGGCuGCGCc -3'
miRNA:   3'- gCaGUGGCGGC---------AGaa---------GCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 83023 0.66 0.716431
Target:  5'- uGgggCGCCGCCGgcc-CGCGGccgcuaGUGCGCu -3'
miRNA:   3'- gCa--GUGGCGGCagaaGCGCC------CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 50053 0.66 0.716431
Target:  5'- gGUgGCgGCCGcgggUCcgCGCGcGGCGCGg -3'
miRNA:   3'- gCAgUGgCGGC----AGaaGCGC-CCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 21003 0.66 0.716431
Target:  5'- uCGgCACCGCgCGcggCUgUGCGGGCgacccuGCGCa -3'
miRNA:   3'- -GCaGUGGCG-GCa--GAaGCGCCCG------CGCG- -5'
6346 3' -60.6 NC_001847.1 + 34178 0.66 0.716431
Target:  5'- aGgCGCUGCgGgc--CGgGGGCGCGCa -3'
miRNA:   3'- gCaGUGGCGgCagaaGCgCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 103998 0.66 0.716431
Target:  5'- gGcCACCGCCG-CggccggcagcUCGuCGGGCGCcaGCu -3'
miRNA:   3'- gCaGUGGCGGCaGa---------AGC-GCCCGCG--CG- -5'
6346 3' -60.6 NC_001847.1 + 33663 0.66 0.716431
Target:  5'- gCGUgGCCGCgGcCcgCGCGGGgcuagagGCGCa -3'
miRNA:   3'- -GCAgUGGCGgCaGaaGCGCCCg------CGCG- -5'
6346 3' -60.6 NC_001847.1 + 93781 0.66 0.716431
Target:  5'- ---gGCCGCCG-CUUggcugguuccgCGCGGcCGCGCg -3'
miRNA:   3'- gcagUGGCGGCaGAA-----------GCGCCcGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.