miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 36988 0.7 0.434088
Target:  5'- -aGCgGGCCCGcGCcGAGCGGCGGcGg- -3'
miRNA:   3'- uaCG-CCGGGCaCGuUUUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 65115 0.71 0.398896
Target:  5'- -cGCGGCUCG-GCu-GGCGGUGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGuuUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15073 0.66 0.672053
Target:  5'- -gGCGGCCCGgggaucgccUGCG--GCaGCGGGg- -3'
miRNA:   3'- uaCGCCGGGC---------ACGUuuUGcCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 27755 0.66 0.672053
Target:  5'- uUGCGGCggggggCUGUGCGgggcguacaauaAAcugcGCGGCGGGUg -3'
miRNA:   3'- uACGCCG------GGCACGU------------UU----UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 110926 0.66 0.672053
Target:  5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3'
miRNA:   3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 6761 0.68 0.559272
Target:  5'- gGUGCGGCCgGUGCGAGGCGccagcugcuccGUGGc-- -3'
miRNA:   3'- -UACGCCGGgCACGUUUUGC-----------CGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 32326 0.69 0.519297
Target:  5'- -gGgGGCCCGcGCGGcGCGGCGcGGa- -3'
miRNA:   3'- uaCgCCGGGCaCGUUuUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 53762 0.66 0.672053
Target:  5'- -gGCGGCCCGagGCGGcGAgGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa-CGUU-UUgCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 37323 0.69 0.506542
Target:  5'- -cGCGcGCCgagcacagcgcuggCGUGCGGucauGCGGCGGGUc -3'
miRNA:   3'- uaCGC-CGG--------------GCACGUUu---UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 67629 0.69 0.490069
Target:  5'- -gGCGGCgCCG-GCgGAGACGGCGGcGg- -3'
miRNA:   3'- uaCGCCG-GGCaCG-UUUUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 42338 0.69 0.490069
Target:  5'- uGUGgGcGCCCGUGUGGcGCGGCGGcGa- -3'
miRNA:   3'- -UACgC-CGGGCACGUUuUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 2268 0.66 0.672053
Target:  5'- -gGCGGCaCGcgGCGGAagccgccgucgGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUU-----------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 2357 0.66 0.672053
Target:  5'- -cGcCGGCCCGgccGCGucGGCGGCGGcGg- -3'
miRNA:   3'- uaC-GCCGGGCa--CGUu-UUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 8113 0.66 0.672053
Target:  5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3'
miRNA:   3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 44292 0.7 0.480497
Target:  5'- -gGCGGCgCGgcGCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 70578 0.7 0.480497
Target:  5'- -cGCGGCCCGagGCA--GCGGauGGUg -3'
miRNA:   3'- uaCGCCGGGCa-CGUuuUGCCgcCCAa -5'
6346 5' -59.2 NC_001847.1 + 3881 0.69 0.490069
Target:  5'- -gGCGGCCCGUcGCGcgGCGccGCGGcGUa -3'
miRNA:   3'- uaCGCCGGGCA-CGUuuUGC--CGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 29982 0.69 0.490069
Target:  5'- -cGCGGCCgGgccgGC---GCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGgCa---CGuuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 61482 0.66 0.702581
Target:  5'- -cGCGucGCUgGcGCAcAGCGGCGGGUa -3'
miRNA:   3'- uaCGC--CGGgCaCGUuUUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 5051 0.66 0.702581
Target:  5'- -gGCGGCuCCGacGgGAcgGACGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCa-CgUU--UUGCCGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.