miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 33502 0.69 0.519297
Target:  5'- -gGCGGCgCGgGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 67189 0.69 0.529193
Target:  5'- -gGCGcGCagguagcacacgCCGUGCcGAGCGGCGGGc- -3'
miRNA:   3'- uaCGC-CG------------GGCACGuUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 31923 0.74 0.252273
Target:  5'- -cGCGGCCgCG-GCuccGCGGCGGGUa -3'
miRNA:   3'- uaCGCCGG-GCaCGuuuUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 105961 0.74 0.2776
Target:  5'- -gGCGGCgCCG-GCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCaCGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 102667 0.72 0.334243
Target:  5'- -aGCGGCCgCGaggGCGGGGgGGCGGGg- -3'
miRNA:   3'- uaCGCCGG-GCa--CGUUUUgCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 49714 0.72 0.357562
Target:  5'- -cGCGgcGCCCGUGCAAGugGGCGccggcgaggcGGUg -3'
miRNA:   3'- uaCGC--CGGGCACGUUUugCCGC----------CCAa -5'
6346 5' -59.2 NC_001847.1 + 68058 0.71 0.416265
Target:  5'- -gGCGGCCuCGcgGCGcgccuGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGG-GCa-CGUuu---UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 107807 0.7 0.434088
Target:  5'- -gGCGGCCgCG-GCAAAgcGCGGCGGcGg- -3'
miRNA:   3'- uaCGCCGG-GCaCGUUU--UGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 134765 0.7 0.471016
Target:  5'- -cGCGGUCCGgcGCGcgGCGcGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCa-CGUuuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 106694 0.69 0.490069
Target:  5'- -gGCGGCCCGUcGCGcgGCGccGCGGcGUa -3'
miRNA:   3'- uaCGCCGGGCA-CGUuuUGC--CGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 10134 0.66 0.712649
Target:  5'- -aGCgGGCCCGgccGUAGcGCGaGCGGGa- -3'
miRNA:   3'- uaCG-CCGGGCa--CGUUuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 77400 0.66 0.692453
Target:  5'- -cGUGGCCCGgcgGCAcuacgAGACGgGCGaGGg- -3'
miRNA:   3'- uaCGCCGGGCa--CGU-----UUUGC-CGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 6761 0.68 0.559272
Target:  5'- gGUGCGGCCgGUGCGAGGCGccagcugcuccGUGGc-- -3'
miRNA:   3'- -UACGCCGGgCACGUUUUGC-----------CGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 54535 0.68 0.57959
Target:  5'- -gGCcGUCCGgggGCGcAGACGGCGGGg- -3'
miRNA:   3'- uaCGcCGGGCa--CGU-UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 32056 0.67 0.620626
Target:  5'- ---aGGUCCGggGCGcggAGACGGCGGGg- -3'
miRNA:   3'- uacgCCGGGCa-CGU---UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 100645 0.67 0.629896
Target:  5'- cUGCGGCgccagggCCGcGCugcuGCGGCGGGg- -3'
miRNA:   3'- uACGCCG-------GGCaCGuuu-UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 78346 0.67 0.641227
Target:  5'- -cGcCGGcCCCGUgaGCGcgacGAACGGCGGGc- -3'
miRNA:   3'- uaC-GCC-GGGCA--CGU----UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 54498 0.67 0.661799
Target:  5'- -gGCGGCgCCGggGCcgggguggGGGGCGGUGGGg- -3'
miRNA:   3'- uaCGCCG-GGCa-CG--------UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 110926 0.66 0.672053
Target:  5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3'
miRNA:   3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 133905 0.66 0.682274
Target:  5'- cUGCGGCCgGUGUAccuGGCcuGCGGGc- -3'
miRNA:   3'- uACGCCGGgCACGUu--UUGc-CGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.