miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 132795 0.69 0.490069
Target:  5'- -cGCGGCCgGgccgGC---GCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGgCa---CGuuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 3881 0.69 0.490069
Target:  5'- -gGCGGCCCGUcGCGcgGCGccGCGGcGUa -3'
miRNA:   3'- uaCGCCGGGCA-CGUuuUGC--CGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 37323 0.69 0.506542
Target:  5'- -cGCGcGCCgagcacagcgcuggCGUGCGGucauGCGGCGGGUc -3'
miRNA:   3'- uaCGC-CGG--------------GCACGUUu---UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 69455 0.69 0.509474
Target:  5'- -gGCGGCgCGcGCGcggcGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGgGCaCGUu---UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 53602 0.69 0.519297
Target:  5'- uUGCgGGCCaCGgugGC-GGGCGGCGGGg- -3'
miRNA:   3'- uACG-CCGG-GCa--CGuUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 33502 0.69 0.519297
Target:  5'- -gGCGGCgCGgGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 135139 0.69 0.519297
Target:  5'- -gGgGGCCCGcGCGGcGCGGCGcGGa- -3'
miRNA:   3'- uaCgCCGGGCaCGUUuUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 32326 0.69 0.519297
Target:  5'- -gGgGGCCCGcGCGGcGCGGCGcGGa- -3'
miRNA:   3'- uaCgCCGGGCaCGUUuUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 94126 0.69 0.519297
Target:  5'- -gGCGcGCCCGuUGCAGGACGGCa---- -3'
miRNA:   3'- uaCGC-CGGGC-ACGUUUUGCCGcccaa -5'
6346 5' -59.2 NC_001847.1 + 81795 0.69 0.5282
Target:  5'- -cGCGGaCCUGgugGCcuacgcgGAGGCGGCGGGg- -3'
miRNA:   3'- uaCGCC-GGGCa--CG-------UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 32363 0.69 0.529193
Target:  5'- gGUGCuGGCCUuuuugGUGCAGAACGGCGc--- -3'
miRNA:   3'- -UACG-CCGGG-----CACGUUUUGCCGCccaa -5'
6346 5' -59.2 NC_001847.1 + 67189 0.69 0.529193
Target:  5'- -gGCGcGCagguagcacacgCCGUGCcGAGCGGCGGGc- -3'
miRNA:   3'- uaCGC-CG------------GGCACGuUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 36379 0.69 0.529193
Target:  5'- -cGCGGCCCGgGCAGcgcgcgccGCGGCGacGGUg -3'
miRNA:   3'- uaCGCCGGGCaCGUUu-------UGCCGC--CCAa -5'
6346 5' -59.2 NC_001847.1 + 32021 0.69 0.529193
Target:  5'- -gGCGGCCCGcGCu---CGcGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGuuuuGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 115710 0.69 0.538159
Target:  5'- cUGCGGCCCGUGUGcgcuugccgccacGGGCGcGCuGGUg -3'
miRNA:   3'- uACGCCGGGCACGU-------------UUUGC-CGcCCAa -5'
6346 5' -59.2 NC_001847.1 + 58744 0.69 0.539158
Target:  5'- -gGCGGCCCGacaGCG--GCGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa--CGUuuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 100596 0.69 0.539158
Target:  5'- -gGCGGCCUGUGgcccCAAGcgccCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCAC----GUUUu---GCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 12335 0.68 0.549186
Target:  5'- -cGcCGGCUCGcUGguGAGCGGUGGGc- -3'
miRNA:   3'- uaC-GCCGGGC-ACguUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 13535 0.68 0.549186
Target:  5'- -aGCGGCagcaaccgccgCCGggGCGGcGCGGUGGGUUg -3'
miRNA:   3'- uaCGCCG-----------GGCa-CGUUuUGCCGCCCAA- -5'
6346 5' -59.2 NC_001847.1 + 113325 0.68 0.549186
Target:  5'- -gGCGGCUgGUGCAAGuCGGUGuGGc- -3'
miRNA:   3'- uaCGCCGGgCACGUUUuGCCGC-CCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.