miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 36988 0.7 0.434088
Target:  5'- -aGCgGGCCCGcGCcGAGCGGCGGcGg- -3'
miRNA:   3'- uaCG-CCGGGCaCGuUUUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 37323 0.69 0.506542
Target:  5'- -cGCGcGCCgagcacagcgcuggCGUGCGGucauGCGGCGGGUc -3'
miRNA:   3'- uaCGC-CGG--------------GCACGUUu---UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 37476 0.72 0.357562
Target:  5'- -gGCcgGGCCCGgccugGCA--GCGGCGGGUc -3'
miRNA:   3'- uaCG--CCGGGCa----CGUuuUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 41959 0.68 0.57959
Target:  5'- -cGCGG-CCGUGCAuAGugGGCGGc-- -3'
miRNA:   3'- uaCGCCgGGCACGU-UUugCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 42147 0.66 0.692453
Target:  5'- -aGCuGGCCCG-GCGccuGGAcguugcCGGCGGGUg -3'
miRNA:   3'- uaCG-CCGGGCaCGU---UUU------GCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 42338 0.69 0.490069
Target:  5'- uGUGgGcGCCCGUGUGGcGCGGCGGcGa- -3'
miRNA:   3'- -UACgC-CGGGCACGUUuUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 42733 0.67 0.620626
Target:  5'- -gGCGG-CCGcGC-GGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCgGGCaCGuUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 44292 0.7 0.480497
Target:  5'- -gGCGGCgCGgcGCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 49714 0.72 0.357562
Target:  5'- -cGCGgcGCCCGUGCAAGugGGCGccggcgaggcGGUg -3'
miRNA:   3'- uaCGC--CGGGCACGUUUugCCGC----------CCAa -5'
6346 5' -59.2 NC_001847.1 + 51299 0.66 0.672053
Target:  5'- -cGCGcaauuccaGCCCGUGCu--GCGGCGGc-- -3'
miRNA:   3'- uaCGC--------CGGGCACGuuuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 51520 0.68 0.57959
Target:  5'- gGUGCGGCgCCG-GCA----GGCGGGg- -3'
miRNA:   3'- -UACGCCG-GGCaCGUuuugCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 53602 0.69 0.519297
Target:  5'- uUGCgGGCCaCGgugGC-GGGCGGCGGGg- -3'
miRNA:   3'- uACG-CCGG-GCa--CGuUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 53762 0.66 0.672053
Target:  5'- -gGCGGCCCGagGCGGcGAgGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa-CGUU-UUgCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 53868 0.67 0.641227
Target:  5'- -gGCGGCgCCGaccGCcgcgGGGGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCa--CG----UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 53973 0.66 0.702581
Target:  5'- -cGCGaGCCCuccgaGCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGC-CGGGca---CGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 54432 0.74 0.264691
Target:  5'- -gGCGGCCCGgGCAGAGacgaggggGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGUUUUg-------CCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 54498 0.67 0.661799
Target:  5'- -gGCGGCgCCGggGCcgggguggGGGGCGGUGGGg- -3'
miRNA:   3'- uaCGCCG-GGCa-CG--------UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 54535 0.68 0.57959
Target:  5'- -gGCcGUCCGgggGCGcAGACGGCGGGg- -3'
miRNA:   3'- uaCGcCGGGCa--CGU-UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 54681 0.71 0.407523
Target:  5'- -cGCGGCCCGacgGCG--GCGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa--CGUuuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 55084 0.7 0.480497
Target:  5'- -gGCGGCCgCGggggGCGGGugGGCGGu-- -3'
miRNA:   3'- uaCGCCGG-GCa---CGUUUugCCGCCcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.