miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 29464 0.67 0.651521
Target:  5'- -gGCGGCCCGcGCGu--CGGCcuGGGc- -3'
miRNA:   3'- uaCGCCGGGCaCGUuuuGCCG--CCCaa -5'
6346 5' -59.2 NC_001847.1 + 29548 0.68 0.589809
Target:  5'- -cGCGGCCCuGgagGCcgc-CGGCGGGg- -3'
miRNA:   3'- uaCGCCGGG-Ca--CGuuuuGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 29982 0.69 0.490069
Target:  5'- -cGCGGCCgGgccgGC---GCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGgCa---CGuuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 30401 0.7 0.434088
Target:  5'- -gGCGGCCCGaguggccgccGCGccGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCa---------CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 30763 0.67 0.610335
Target:  5'- -cGCGGCCCGcUGCAGcgccGCGcgucuGCGGGc- -3'
miRNA:   3'- uaCGCCGGGC-ACGUUu---UGC-----CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 30812 0.67 0.641227
Target:  5'- cUGCcGCCgCG-GCAAAcacgGCGGCGGGg- -3'
miRNA:   3'- uACGcCGG-GCaCGUUU----UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 31092 0.66 0.682274
Target:  5'- cUGCGGCCgGUGUAccuGGCcuGCGGGc- -3'
miRNA:   3'- uACGCCGGgCACGUu--UUGc-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 31923 0.74 0.252273
Target:  5'- -cGCGGCCgCG-GCuccGCGGCGGGUa -3'
miRNA:   3'- uaCGCCGG-GCaCGuuuUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 31952 0.7 0.471016
Target:  5'- -cGCGGUCCGgcGCGcgGCGcGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCa-CGUuuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 32021 0.69 0.529193
Target:  5'- -gGCGGCCCGcGCu---CGcGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGuuuuGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 32056 0.67 0.620626
Target:  5'- ---aGGUCCGggGCGcggAGACGGCGGGg- -3'
miRNA:   3'- uacgCCGGGCa-CGU---UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 32326 0.69 0.519297
Target:  5'- -gGgGGCCCGcGCGGcGCGGCGcGGa- -3'
miRNA:   3'- uaCgCCGGGCaCGUUuUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 32363 0.69 0.529193
Target:  5'- gGUGCuGGCCUuuuugGUGCAGAACGGCGc--- -3'
miRNA:   3'- -UACG-CCGGG-----CACGUUUUGCCGCccaa -5'
6346 5' -59.2 NC_001847.1 + 33120 0.66 0.692453
Target:  5'- -gGgGGCCCc-GUAccuGCGGCGGGUg -3'
miRNA:   3'- uaCgCCGGGcaCGUuu-UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 33333 0.71 0.416265
Target:  5'- -gGCGGCgCGcUGCGuGACGGUGGGc- -3'
miRNA:   3'- uaCGCCGgGC-ACGUuUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 33502 0.69 0.519297
Target:  5'- -gGCGGCgCGgGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 33585 0.68 0.559272
Target:  5'- -cGCGGCCCGgGCu---CGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCaCGuuuuGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 34085 0.7 0.471016
Target:  5'- -gGCGGCCCcgggGCcggccuCGGCGGGUg -3'
miRNA:   3'- uaCGCCGGGca--CGuuuu--GCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 36379 0.69 0.529193
Target:  5'- -cGCGGCCCGgGCAGcgcgcgccGCGGCGacGGUg -3'
miRNA:   3'- uaCGCCGGGCaCGUUu-------UGCCGC--CCAa -5'
6346 5' -59.2 NC_001847.1 + 36499 0.7 0.443164
Target:  5'- -gGCGGCCCuucuggGCGAcgaAGCGGCGGuGUg -3'
miRNA:   3'- uaCGCCGGGca----CGUU---UUGCCGCC-CAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.