miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 53602 0.69 0.519297
Target:  5'- uUGCgGGCCaCGgugGC-GGGCGGCGGGg- -3'
miRNA:   3'- uACG-CCGG-GCa--CGuUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 25720 0.71 0.381999
Target:  5'- cUGCGGCCCGagaagGaCGAGaagcgGCGGCGGGc- -3'
miRNA:   3'- uACGCCGGGCa----C-GUUU-----UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 13960 0.77 0.175647
Target:  5'- cUGCGGCCCGUgggagcccgccccugGCcggcAAGCGGCGGGUc -3'
miRNA:   3'- uACGCCGGGCA---------------CGu---UUUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 69455 0.69 0.509474
Target:  5'- -gGCGGCgCGcGCGcggcGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGgGCaCGUu---UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 77098 0.79 0.124291
Target:  5'- -gGCGGCCCGcGCGcgguAGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGUu---UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 100645 0.67 0.629896
Target:  5'- cUGCGGCgccagggCCGcGCugcuGCGGCGGGg- -3'
miRNA:   3'- uACGCCG-------GGCaCGuuu-UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 64152 0.75 0.232837
Target:  5'- cAUGCGGCCCGccaugcaggccgcuUGCGcggacgGGGCGGCGGGc- -3'
miRNA:   3'- -UACGCCGGGC--------------ACGU------UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 32056 0.67 0.620626
Target:  5'- ---aGGUCCGggGCGcggAGACGGCGGGg- -3'
miRNA:   3'- uacgCCGGGCa-CGU---UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15516 0.68 0.60006
Target:  5'- gAUGCGGCUCG-GCGgGAGCcGCGGGc- -3'
miRNA:   3'- -UACGCCGGGCaCGU-UUUGcCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 107618 0.68 0.569409
Target:  5'- -gGUGGCCUGggggagacgggGUAGGGgGGCGGGUg -3'
miRNA:   3'- uaCGCCGGGCa----------CGUUUUgCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 83241 0.68 0.549186
Target:  5'- -cGCGGCCgGggcgGCGGccgaaagcGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGgCa---CGUUu-------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 36379 0.69 0.529193
Target:  5'- -cGCGGCCCGgGCAGcgcgcgccGCGGCGacGGUg -3'
miRNA:   3'- uaCGCCGGGCaCGUUu-------UGCCGC--CCAa -5'
6346 5' -59.2 NC_001847.1 + 33502 0.69 0.519297
Target:  5'- -gGCGGCgCGgGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 10849 0.7 0.480497
Target:  5'- -gGCGGCgCGUGgcCGAGgcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCAC--GUUU--UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 131120 0.7 0.461632
Target:  5'- -aGCGGCCCc-GCGAGA-GGCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUgCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 36988 0.7 0.434088
Target:  5'- -aGCgGGCCCGcGCcGAGCGGCGGcGg- -3'
miRNA:   3'- uaCG-CCGGGCaCGuUUUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 65115 0.71 0.398896
Target:  5'- -cGCGGCUCG-GCu-GGCGGUGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGuuUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 81219 0.72 0.349664
Target:  5'- gAUGCaGGCUCGgcgGCAGcGGCGGCGGGc- -3'
miRNA:   3'- -UACG-CCGGGCa--CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15769 0.73 0.325232
Target:  5'- -gGCGGCCCGcuuucgccggcgGCAAGcgccgcGCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGGCa-----------CGUUU------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 54432 0.74 0.264691
Target:  5'- -gGCGGCCCGgGCAGAGacgaggggGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGUUUUg-------CCGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.