miRNA display CGI


Results 41 - 60 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 96340 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 96382 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 103017 0.66 0.722648
Target:  5'- -gGCGGCgCCcaGCGccGGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGcaCGUu-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 21744 0.66 0.722648
Target:  5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3'
miRNA:   3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5'
6346 5' -59.2 NC_001847.1 + 76027 0.66 0.722648
Target:  5'- -cGCGGCCgGaGCG--GCGGCGGcGa- -3'
miRNA:   3'- uaCGCCGGgCaCGUuuUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 61482 0.66 0.702581
Target:  5'- -cGCGucGCUgGcGCAcAGCGGCGGGUa -3'
miRNA:   3'- uaCGC--CGGgCaCGUuUUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 42147 0.66 0.692453
Target:  5'- -aGCuGGCCCG-GCGccuGGAcguugcCGGCGGGUg -3'
miRNA:   3'- uaCG-CCGGGCaCGU---UUU------GCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 2268 0.66 0.672053
Target:  5'- -gGCGGCaCGcgGCGGAagccgccgucgGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUU-----------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 2357 0.66 0.672053
Target:  5'- -cGcCGGCCCGgccGCGucGGCGGCGGcGg- -3'
miRNA:   3'- uaC-GCCGGGCa--CGUu-UUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 68842 0.66 0.672053
Target:  5'- -cGCGaagaGCUCGggcGCGAGGCGGCGGcGUg -3'
miRNA:   3'- uaCGC----CGGGCa--CGUUUUGCCGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 108608 0.66 0.672053
Target:  5'- -cGCGcGCCgaaaaCGUGCuccggGGGACGGCGGGc- -3'
miRNA:   3'- uaCGC-CGG-----GCACG-----UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 134214 0.66 0.672053
Target:  5'- -cGCGGgCCGaggGCG--GCGGUGGGa- -3'
miRNA:   3'- uaCGCCgGGCa--CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 31092 0.66 0.682274
Target:  5'- cUGCGGCCgGUGUAccuGGCcuGCGGGc- -3'
miRNA:   3'- uACGCCGGgCACGUu--UUGc-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 3998 0.66 0.682274
Target:  5'- -cGCGGCCCc-GCGGGGCGcCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUGCcGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 56744 0.66 0.682274
Target:  5'- -aGCGcGCCC--GCA--GCGGCGGGg- -3'
miRNA:   3'- uaCGC-CGGGcaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 59444 0.66 0.682274
Target:  5'- -cGCGGCCCGUGgcccGAGCGGCu---- -3'
miRNA:   3'- uaCGCCGGGCACgu--UUUGCCGcccaa -5'
6346 5' -59.2 NC_001847.1 + 125465 0.66 0.682274
Target:  5'- -gGCGGgUCGgcgGCAGcucGCGGCGGGc- -3'
miRNA:   3'- uaCGCCgGGCa--CGUUu--UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 29320 0.66 0.682274
Target:  5'- -cGCGGCCC--GCGAcGCGGUGGa-- -3'
miRNA:   3'- uaCGCCGGGcaCGUUuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 33120 0.66 0.692453
Target:  5'- -gGgGGCCCc-GUAccuGCGGCGGGUg -3'
miRNA:   3'- uaCgCCGGGcaCGUuu-UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 14309 0.66 0.692453
Target:  5'- -cGCGGCCCcgcucccgcUGCuc-GCGGUGGGg- -3'
miRNA:   3'- uaCGCCGGGc--------ACGuuuUGCCGCCCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.