Results 41 - 60 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6346 | 5' | -59.2 | NC_001847.1 | + | 125465 | 0.66 | 0.682274 |
Target: 5'- -gGCGGgUCGgcgGCAGcucGCGGCGGGc- -3' miRNA: 3'- uaCGCCgGGCa--CGUUu--UGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 59444 | 0.66 | 0.682274 |
Target: 5'- -cGCGGCCCGUGgcccGAGCGGCu---- -3' miRNA: 3'- uaCGCCGGGCACgu--UUUGCCGcccaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 56744 | 0.66 | 0.682274 |
Target: 5'- -aGCGcGCCC--GCA--GCGGCGGGg- -3' miRNA: 3'- uaCGC-CGGGcaCGUuuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 3998 | 0.66 | 0.682274 |
Target: 5'- -cGCGGCCCc-GCGGGGCGcCGGGc- -3' miRNA: 3'- uaCGCCGGGcaCGUUUUGCcGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 31092 | 0.66 | 0.682274 |
Target: 5'- cUGCGGCCgGUGUAccuGGCcuGCGGGc- -3' miRNA: 3'- uACGCCGGgCACGUu--UUGc-CGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 29320 | 0.66 | 0.682274 |
Target: 5'- -cGCGGCCC--GCGAcGCGGUGGa-- -3' miRNA: 3'- uaCGCCGGGcaCGUUuUGCCGCCcaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 134214 | 0.66 | 0.672053 |
Target: 5'- -cGCGGgCCGaggGCG--GCGGUGGGa- -3' miRNA: 3'- uaCGCCgGGCa--CGUuuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 33120 | 0.66 | 0.692453 |
Target: 5'- -gGgGGCCCc-GUAccuGCGGCGGGUg -3' miRNA: 3'- uaCgCCGGGcaCGUuu-UGCCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 14309 | 0.66 | 0.692453 |
Target: 5'- -cGCGGCCCcgcucccgcUGCuc-GCGGUGGGg- -3' miRNA: 3'- uaCGCCGGGc--------ACGuuuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 42147 | 0.66 | 0.692453 |
Target: 5'- -aGCuGGCCCG-GCGccuGGAcguugcCGGCGGGUg -3' miRNA: 3'- uaCG-CCGGGCaCGU---UUU------GCCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 61482 | 0.66 | 0.702581 |
Target: 5'- -cGCGucGCUgGcGCAcAGCGGCGGGUa -3' miRNA: 3'- uaCGC--CGGgCaCGUuUUGCCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 5051 | 0.66 | 0.702581 |
Target: 5'- -gGCGGCuCCGacGgGAcgGACGGCGGGc- -3' miRNA: 3'- uaCGCCG-GGCa-CgUU--UUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 66483 | 0.67 | 0.651521 |
Target: 5'- -cGCGGCacguCGUGCGugucggccAGCGGCGcGGUg -3' miRNA: 3'- uaCGCCGg---GCACGUu-------UUGCCGC-CCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 132277 | 0.67 | 0.651521 |
Target: 5'- -gGCGGCCCGcGCGu--CGGCcuGGGc- -3' miRNA: 3'- uaCGCCGGGCaCGUuuuGCCG--CCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 78346 | 0.67 | 0.641227 |
Target: 5'- -cGcCGGcCCCGUgaGCGcgacGAACGGCGGGc- -3' miRNA: 3'- uaC-GCC-GGGCA--CGU----UUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 54498 | 0.67 | 0.661799 |
Target: 5'- -gGCGGCgCCGggGCcgggguggGGGGCGGUGGGg- -3' miRNA: 3'- uaCGCCG-GGCa-CG--------UUUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 53868 | 0.67 | 0.641227 |
Target: 5'- -gGCGGCgCCGaccGCcgcgGGGGCGGCGGGc- -3' miRNA: 3'- uaCGCCG-GGCa--CG----UUUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 30812 | 0.67 | 0.641227 |
Target: 5'- cUGCcGCCgCG-GCAAAcacgGCGGCGGGg- -3' miRNA: 3'- uACGcCGG-GCaCGUUU----UGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 59735 | 0.67 | 0.661799 |
Target: 5'- cGUGUGGCCCGcgaUGCccgccucGCGGCGGcGa- -3' miRNA: 3'- -UACGCCGGGC---ACGuuu----UGCCGCC-Caa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 32056 | 0.67 | 0.620626 |
Target: 5'- ---aGGUCCGggGCGcggAGACGGCGGGg- -3' miRNA: 3'- uacgCCGGGCa-CGU---UUUGCCGCCCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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