miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 133214 0.7 0.434088
Target:  5'- -gGCGGCCCGaguggccgccGCGccGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCa---------CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 107807 0.7 0.434088
Target:  5'- -gGCGGCCgCG-GCAAAgcGCGGCGGcGg- -3'
miRNA:   3'- uaCGCCGG-GCaCGUUU--UGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 66936 0.7 0.434088
Target:  5'- -cGCGGCCCGUGCGcccccuACuGuGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCACGUuu----UG-C-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 4994 0.7 0.434088
Target:  5'- -gGCGGCCgCG-GCAAAgcGCGGCGGcGg- -3'
miRNA:   3'- uaCGCCGG-GCaCGUUU--UGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 30401 0.7 0.434088
Target:  5'- -gGCGGCCCGaguggccgccGCGccGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCa---------CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 36499 0.7 0.443164
Target:  5'- -gGCGGCCCuucuggGCGAcgaAGCGGCGGuGUg -3'
miRNA:   3'- uaCGCCGGGca----CGUU---UUGCCGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 28307 0.7 0.461632
Target:  5'- -aGCGGCCCc-GCGAGA-GGCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUgCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 131120 0.7 0.461632
Target:  5'- -aGCGGCCCc-GCGAGA-GGCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUgCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 134765 0.7 0.471016
Target:  5'- -cGCGGUCCGgcGCGcgGCGcGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCa-CGUuuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 34085 0.7 0.471016
Target:  5'- -gGCGGCCCcgggGCcggccuCGGCGGGUg -3'
miRNA:   3'- uaCGCCGGGca--CGuuuu--GCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 31952 0.7 0.471016
Target:  5'- -cGCGGUCCGgcGCGcgGCGcGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCa-CGUuuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 61779 0.7 0.471016
Target:  5'- -gGUGGCgCgGUGCGGGugGGcCGGGUc -3'
miRNA:   3'- uaCGCCG-GgCACGUUUugCC-GCCCAa -5'
6346 5' -59.2 NC_001847.1 + 10849 0.7 0.480497
Target:  5'- -gGCGGCgCGUGgcCGAGgcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCAC--GUUU--UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 55084 0.7 0.480497
Target:  5'- -gGCGGCCgCGggggGCGGGugGGCGGu-- -3'
miRNA:   3'- uaCGCCGG-GCa---CGUUUugCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 44292 0.7 0.480497
Target:  5'- -gGCGGCgCGgcGCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 70578 0.7 0.480497
Target:  5'- -cGCGGCCCGagGCA--GCGGauGGUg -3'
miRNA:   3'- uaCGCCGGGCa-CGUuuUGCCgcCCAa -5'
6346 5' -59.2 NC_001847.1 + 67629 0.69 0.490069
Target:  5'- -gGCGGCgCCG-GCgGAGACGGCGGcGg- -3'
miRNA:   3'- uaCGCCG-GGCaCG-UUUUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 42338 0.69 0.490069
Target:  5'- uGUGgGcGCCCGUGUGGcGCGGCGGcGa- -3'
miRNA:   3'- -UACgC-CGGGCACGUUuUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 29982 0.69 0.490069
Target:  5'- -cGCGGCCgGgccgGC---GCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGgCa---CGuuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 3881 0.69 0.490069
Target:  5'- -gGCGGCCCGUcGCGcgGCGccGCGGcGUa -3'
miRNA:   3'- uaCGCCGGGCA-CGUuuUGC--CGCC-CAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.