miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 106694 0.69 0.490069
Target:  5'- -gGCGGCCCGUcGCGcgGCGccGCGGcGUa -3'
miRNA:   3'- uaCGCCGGGCA-CGUuuUGC--CGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 105961 0.74 0.2776
Target:  5'- -gGCGGCgCCG-GCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCaCGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 105170 0.66 0.672053
Target:  5'- -cGcCGGCCCGgccGCGucGGCGGCGGcGg- -3'
miRNA:   3'- uaC-GCCGGGCa--CGUu-UUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 105081 0.66 0.672053
Target:  5'- -gGCGGCaCGcgGCGGAagccgccgucgGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUU-----------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 104908 0.72 0.357562
Target:  5'- -cGgGGCCCGcGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCgCCGGGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 104785 0.67 0.629896
Target:  5'- -gGCGGCCCGccaGCGccuccccGGGCaGCGGGUc -3'
miRNA:   3'- uaCGCCGGGCa--CGU-------UUUGcCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 103017 0.66 0.722648
Target:  5'- -gGCGGCgCCcaGCGccGGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGcaCGUu-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 102667 0.72 0.334243
Target:  5'- -aGCGGCCgCGaggGCGGGGgGGCGGGg- -3'
miRNA:   3'- uaCGCCGG-GCa--CGUUUUgCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 100645 0.67 0.629896
Target:  5'- cUGCGGCgccagggCCGcGCugcuGCGGCGGGg- -3'
miRNA:   3'- uACGCCG-------GGCaCGuuu-UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 100596 0.69 0.539158
Target:  5'- -gGCGGCCUGUGgcccCAAGcgccCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCAC----GUUUu---GCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 98229 0.67 0.641227
Target:  5'- -aGCGcGCCCaGggagGCGAcgccguGGCGGCGGGg- -3'
miRNA:   3'- uaCGC-CGGG-Ca---CGUU------UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 96934 0.66 0.702581
Target:  5'- -cGCGGCCCGgGCcuccgcGGGCGGCaGGc- -3'
miRNA:   3'- uaCGCCGGGCaCGu-----UUUGCCGcCCaa -5'
6346 5' -59.2 NC_001847.1 + 96382 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 96340 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 96298 0.66 0.712649
Target:  5'- -cGgGGCCgGcgGCGGcAAUGGCGGGg- -3'
miRNA:   3'- uaCgCCGGgCa-CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 94126 0.69 0.519297
Target:  5'- -gGCGcGCCCGuUGCAGGACGGCa---- -3'
miRNA:   3'- uaCGC-CGGGC-ACGUUUUGCCGcccaa -5'
6346 5' -59.2 NC_001847.1 + 92138 0.67 0.610335
Target:  5'- -gGCGGCCCG-GCGcgccccccCGGCGGcGUUc -3'
miRNA:   3'- uaCGCCGGGCaCGUuuu-----GCCGCC-CAA- -5'
6346 5' -59.2 NC_001847.1 + 85639 0.67 0.610335
Target:  5'- -cGC-GCCCG-GCGAAGCGGCgccgaucaGGGUg -3'
miRNA:   3'- uaCGcCGGGCaCGUUUUGCCG--------CCCAa -5'
6346 5' -59.2 NC_001847.1 + 85126 0.66 0.712649
Target:  5'- -gGCGcGCCCGggGCccagcAGGCGGUGGGc- -3'
miRNA:   3'- uaCGC-CGGGCa-CGu----UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 83527 0.67 0.620626
Target:  5'- cUGCGGUCCGUGCGccGCccCGGGg- -3'
miRNA:   3'- uACGCCGGGCACGUuuUGccGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.