miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 125562 0.71 0.407523
Target:  5'- cUGCGGCUCGaucGCGgccgcGGGCGGCGGGc- -3'
miRNA:   3'- uACGCCGGGCa--CGU-----UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 125517 0.72 0.349664
Target:  5'- -gGCGGgCCG-GCGcgGCGGCGGGc- -3'
miRNA:   3'- uaCGCCgGGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 125465 0.66 0.682274
Target:  5'- -gGCGGgUCGgcgGCAGcucGCGGCGGGc- -3'
miRNA:   3'- uaCGCCgGGCa--CGUUu--UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 124557 0.66 0.722648
Target:  5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3'
miRNA:   3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5'
6346 5' -59.2 NC_001847.1 + 119219 0.77 0.187586
Target:  5'- -cGCGGCCaccGCGGGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGgcaCGUUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 119159 0.75 0.246246
Target:  5'- -cGCGGCCgccGCGGGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGgcaCGUUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 119099 0.75 0.246246
Target:  5'- -cGCGGCCgccGCGGGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGgcaCGUUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 118459 0.67 0.630926
Target:  5'- -gGCGGCCuCGUGCcu-GCGGCGcaaGGc- -3'
miRNA:   3'- uaCGCCGG-GCACGuuuUGCCGC---CCaa -5'
6346 5' -59.2 NC_001847.1 + 117308 0.67 0.610335
Target:  5'- -cGCGaGCCgCGauggGCGAccuAGCGGCGGGg- -3'
miRNA:   3'- uaCGC-CGG-GCa---CGUU---UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 116149 0.68 0.57959
Target:  5'- -cGCGGCCCGagGCGcuGGCGGCcgcGGGc- -3'
miRNA:   3'- uaCGCCGGGCa-CGUu-UUGCCG---CCCaa -5'
6346 5' -59.2 NC_001847.1 + 115805 0.73 0.312056
Target:  5'- cUGCGGCuCCGcgcgcUGCGcuGCGGCGGGc- -3'
miRNA:   3'- uACGCCG-GGC-----ACGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 115710 0.69 0.538159
Target:  5'- cUGCGGCCCGUGUGcgcuugccgccacGGGCGcGCuGGUg -3'
miRNA:   3'- uACGCCGGGCACGU-------------UUUGC-CGcCCAa -5'
6346 5' -59.2 NC_001847.1 + 113325 0.68 0.549186
Target:  5'- -gGCGGCUgGUGCAAGuCGGUGuGGc- -3'
miRNA:   3'- uaCGCCGGgCACGUUUuGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 110926 0.66 0.672053
Target:  5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3'
miRNA:   3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 108608 0.66 0.672053
Target:  5'- -cGCGcGCCgaaaaCGUGCuccggGGGACGGCGGGc- -3'
miRNA:   3'- uaCGC-CGG-----GCACG-----UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 107864 0.66 0.702581
Target:  5'- -gGCGGCuCCGacGgGAcgGACGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCa-CgUU--UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 107807 0.7 0.434088
Target:  5'- -gGCGGCCgCG-GCAAAgcGCGGCGGcGg- -3'
miRNA:   3'- uaCGCCGG-GCaCGUUU--UGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 107618 0.68 0.569409
Target:  5'- -gGUGGCCUGggggagacgggGUAGGGgGGCGGGUg -3'
miRNA:   3'- uaCGCCGGGCa----------CGUUUUgCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 106811 0.66 0.682274
Target:  5'- -cGCGGCCCc-GCGGGGCGcCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUGCcGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 106740 0.73 0.312056
Target:  5'- uUGCGcGCCCGcgcugGCGccGCGGCGGGg- -3'
miRNA:   3'- uACGC-CGGGCa----CGUuuUGCCGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.