miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 135139 0.69 0.519297
Target:  5'- -gGgGGCCCGcGCGGcGCGGCGcGGa- -3'
miRNA:   3'- uaCgCCGGGCaCGUUuUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 134938 0.73 0.319325
Target:  5'- -gGCGGCauGUGCA--ACGGUGGGUa -3'
miRNA:   3'- uaCGCCGggCACGUuuUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 134765 0.7 0.471016
Target:  5'- -cGCGGUCCGgcGCGcgGCGcGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCa-CGUuuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 134506 0.68 0.549186
Target:  5'- aGUGUGGgCCGUGCGGccGCGGCGcauguGGUg -3'
miRNA:   3'- -UACGCCgGGCACGUUu-UGCCGC-----CCAa -5'
6346 5' -59.2 NC_001847.1 + 134214 0.66 0.672053
Target:  5'- -cGCGGgCCGaggGCG--GCGGUGGGa- -3'
miRNA:   3'- uaCGCCgGGCa--CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 133905 0.66 0.682274
Target:  5'- cUGCGGCCgGUGUAccuGGCcuGCGGGc- -3'
miRNA:   3'- uACGCCGGgCACGUu--UUGc-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 133214 0.7 0.434088
Target:  5'- -gGCGGCCCGaguggccgccGCGccGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCa---------CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 132800 1.03 0.00278
Target:  5'- cAUGCGGCCCGUGCAAAACGGCGGGUUc -3'
miRNA:   3'- -UACGCCGGGCACGUUUUGCCGCCCAA- -5'
6346 5' -59.2 NC_001847.1 + 132795 0.69 0.490069
Target:  5'- -cGCGGCCgGgccgGC---GCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGgCa---CGuuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 132648 0.72 0.365584
Target:  5'- -gGCGGCCCucGCGAcgucuucacacGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGcaCGUU-----------UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 132361 0.68 0.589809
Target:  5'- -cGCGGCCCuGgagGCcgc-CGGCGGGg- -3'
miRNA:   3'- uaCGCCGGG-Ca--CGuuuuGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 132277 0.67 0.651521
Target:  5'- -gGCGGCCCGcGCGu--CGGCcuGGGc- -3'
miRNA:   3'- uaCGCCGGGCaCGUuuuGCCG--CCCaa -5'
6346 5' -59.2 NC_001847.1 + 132133 0.66 0.682274
Target:  5'- -cGCGGCCC--GCGAcGCGGUGGa-- -3'
miRNA:   3'- uaCGCCGGGcaCGUUuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 131775 0.68 0.559272
Target:  5'- -cGCGGCUCGgcgcGCGGAuuGCGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa---CGUUU--UGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 131602 0.71 0.390388
Target:  5'- -aGCGGCgCGUGCAGGGCuGcCGGGg- -3'
miRNA:   3'- uaCGCCGgGCACGUUUUGcC-GCCCaa -5'
6346 5' -59.2 NC_001847.1 + 131353 0.66 0.722648
Target:  5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3'
miRNA:   3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 131120 0.7 0.461632
Target:  5'- -aGCGGCCCc-GCGAGA-GGCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUgCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 129303 0.66 0.712649
Target:  5'- -gGCgGGCCUgGUGCAAGGCGggccugccgggcGCGGGg- -3'
miRNA:   3'- uaCG-CCGGG-CACGUUUUGC------------CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 127340 0.71 0.39804
Target:  5'- -gGCGGCCgGcUGCcgcggcaGGGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGgC-ACG-------UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 127211 0.68 0.559272
Target:  5'- -cGCcGCaaGcUGCAAAACGGCGGGg- -3'
miRNA:   3'- uaCGcCGggC-ACGUUUUGCCGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.