miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 49 0.82 0.077044
Target:  5'- -cGCGGCgCGUGCAuuGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCACGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 2095 0.72 0.357562
Target:  5'- -cGgGGCCCGcGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCgCCGGGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 2268 0.66 0.672053
Target:  5'- -gGCGGCaCGcgGCGGAagccgccgucgGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUU-----------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 2357 0.66 0.672053
Target:  5'- -cGcCGGCCCGgccGCGucGGCGGCGGcGg- -3'
miRNA:   3'- uaC-GCCGGGCa--CGUu-UUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 3148 0.74 0.2776
Target:  5'- -gGCGGCgCCG-GCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCaCGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 3881 0.69 0.490069
Target:  5'- -gGCGGCCCGUcGCGcgGCGccGCGGcGUa -3'
miRNA:   3'- uaCGCCGGGCA-CGUuuUGC--CGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 3927 0.73 0.312056
Target:  5'- uUGCGcGCCCGcgcugGCGccGCGGCGGGg- -3'
miRNA:   3'- uACGC-CGGGCa----CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 3998 0.66 0.682274
Target:  5'- -cGCGGCCCc-GCGGGGCGcCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUGCcGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 4805 0.68 0.569409
Target:  5'- -gGUGGCCUGggggagacgggGUAGGGgGGCGGGUg -3'
miRNA:   3'- uaCGCCGGGCa----------CGUUUUgCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 4994 0.7 0.434088
Target:  5'- -gGCGGCCgCG-GCAAAgcGCGGCGGcGg- -3'
miRNA:   3'- uaCGCCGG-GCaCGUUU--UGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 5051 0.66 0.702581
Target:  5'- -gGCGGCuCCGacGgGAcgGACGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCa-CgUU--UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 6761 0.68 0.559272
Target:  5'- gGUGCGGCCgGUGCGAGGCGccagcugcuccGUGGc-- -3'
miRNA:   3'- -UACGCCGGgCACGUUUUGC-----------CGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 7239 0.71 0.425121
Target:  5'- -aGCGGCuggucggguggCUGUGCGGGcGCGGCGGGg- -3'
miRNA:   3'- uaCGCCG-----------GGCACGUUU-UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 8113 0.66 0.672053
Target:  5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3'
miRNA:   3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 8708 0.66 0.712649
Target:  5'- -cGaCGGCCaCG-GCuGGugGGCGGGg- -3'
miRNA:   3'- uaC-GCCGG-GCaCGuUUugCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 10134 0.66 0.712649
Target:  5'- -aGCgGGCCCGgccGUAGcGCGaGCGGGa- -3'
miRNA:   3'- uaCG-CCGGGCa--CGUUuUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 10849 0.7 0.480497
Target:  5'- -gGCGGCgCGUGgcCGAGgcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCAC--GUUU--UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 12226 0.67 0.641227
Target:  5'- -cGCGGCgCGcGCAcacccGAACGGCGaGGg- -3'
miRNA:   3'- uaCGCCGgGCaCGU-----UUUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 12335 0.68 0.549186
Target:  5'- -cGcCGGCUCGcUGguGAGCGGUGGGc- -3'
miRNA:   3'- uaC-GCCGGGC-ACguUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 12476 0.68 0.589809
Target:  5'- -cGCGGCUUcccGCGugGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGca-CGUuuUGCCGCCCaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.