Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6346 | 5' | -59.2 | NC_001847.1 | + | 49 | 0.82 | 0.077044 |
Target: 5'- -cGCGGCgCGUGCAuuGCGGCGGGc- -3' miRNA: 3'- uaCGCCGgGCACGUuuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 2095 | 0.72 | 0.357562 |
Target: 5'- -cGgGGCCCGcGCG--GCGGCGGGc- -3' miRNA: 3'- uaCgCCGGGCaCGUuuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 2268 | 0.66 | 0.672053 |
Target: 5'- -gGCGGCaCGcgGCGGAagccgccgucgGCGGCGGGg- -3' miRNA: 3'- uaCGCCGgGCa-CGUUU-----------UGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 2357 | 0.66 | 0.672053 |
Target: 5'- -cGcCGGCCCGgccGCGucGGCGGCGGcGg- -3' miRNA: 3'- uaC-GCCGGGCa--CGUu-UUGCCGCC-Caa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 3148 | 0.74 | 0.2776 |
Target: 5'- -gGCGGCgCCG-GCGGcGCGGCGGGc- -3' miRNA: 3'- uaCGCCG-GGCaCGUUuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 3881 | 0.69 | 0.490069 |
Target: 5'- -gGCGGCCCGUcGCGcgGCGccGCGGcGUa -3' miRNA: 3'- uaCGCCGGGCA-CGUuuUGC--CGCC-CAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 3927 | 0.73 | 0.312056 |
Target: 5'- uUGCGcGCCCGcgcugGCGccGCGGCGGGg- -3' miRNA: 3'- uACGC-CGGGCa----CGUuuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 3998 | 0.66 | 0.682274 |
Target: 5'- -cGCGGCCCc-GCGGGGCGcCGGGc- -3' miRNA: 3'- uaCGCCGGGcaCGUUUUGCcGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 4805 | 0.68 | 0.569409 |
Target: 5'- -gGUGGCCUGggggagacgggGUAGGGgGGCGGGUg -3' miRNA: 3'- uaCGCCGGGCa----------CGUUUUgCCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 4994 | 0.7 | 0.434088 |
Target: 5'- -gGCGGCCgCG-GCAAAgcGCGGCGGcGg- -3' miRNA: 3'- uaCGCCGG-GCaCGUUU--UGCCGCC-Caa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 5051 | 0.66 | 0.702581 |
Target: 5'- -gGCGGCuCCGacGgGAcgGACGGCGGGc- -3' miRNA: 3'- uaCGCCG-GGCa-CgUU--UUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 6761 | 0.68 | 0.559272 |
Target: 5'- gGUGCGGCCgGUGCGAGGCGccagcugcuccGUGGc-- -3' miRNA: 3'- -UACGCCGGgCACGUUUUGC-----------CGCCcaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 7239 | 0.71 | 0.425121 |
Target: 5'- -aGCGGCuggucggguggCUGUGCGGGcGCGGCGGGg- -3' miRNA: 3'- uaCGCCG-----------GGCACGUUU-UGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 8113 | 0.66 | 0.672053 |
Target: 5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3' miRNA: 3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 8708 | 0.66 | 0.712649 |
Target: 5'- -cGaCGGCCaCG-GCuGGugGGCGGGg- -3' miRNA: 3'- uaC-GCCGG-GCaCGuUUugCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 10134 | 0.66 | 0.712649 |
Target: 5'- -aGCgGGCCCGgccGUAGcGCGaGCGGGa- -3' miRNA: 3'- uaCG-CCGGGCa--CGUUuUGC-CGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 10849 | 0.7 | 0.480497 |
Target: 5'- -gGCGGCgCGUGgcCGAGgcGCGGCGGGc- -3' miRNA: 3'- uaCGCCGgGCAC--GUUU--UGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 12226 | 0.67 | 0.641227 |
Target: 5'- -cGCGGCgCGcGCAcacccGAACGGCGaGGg- -3' miRNA: 3'- uaCGCCGgGCaCGU-----UUUGCCGC-CCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 12335 | 0.68 | 0.549186 |
Target: 5'- -cGcCGGCUCGcUGguGAGCGGUGGGc- -3' miRNA: 3'- uaC-GCCGGGC-ACguUUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 12476 | 0.68 | 0.589809 |
Target: 5'- -cGCGGCUUcccGCGugGCGGCGGGg- -3' miRNA: 3'- uaCGCCGGGca-CGUuuUGCCGCCCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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