miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 49 0.82 0.077044
Target:  5'- -cGCGGCgCGUGCAuuGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGgGCACGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 25720 0.71 0.381999
Target:  5'- cUGCGGCCCGagaagGaCGAGaagcgGCGGCGGGc- -3'
miRNA:   3'- uACGCCGGGCa----C-GUUU-----UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 65115 0.71 0.398896
Target:  5'- -cGCGGCUCG-GCu-GGCGGUGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGuuUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 131353 0.66 0.722648
Target:  5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3'
miRNA:   3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 64152 0.75 0.232837
Target:  5'- cAUGCGGCCCGccaugcaggccgcuUGCGcggacgGGGCGGCGGGc- -3'
miRNA:   3'- -UACGCCGGGC--------------ACGU------UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 31923 0.74 0.252273
Target:  5'- -cGCGGCCgCG-GCuccGCGGCGGGUa -3'
miRNA:   3'- uaCGCCGG-GCaCGuuuUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 54432 0.74 0.264691
Target:  5'- -gGCGGCCCGgGCAGAGacgaggggGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGUUUUg-------CCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 105961 0.74 0.2776
Target:  5'- -gGCGGCgCCG-GCGGcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCaCGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15769 0.73 0.325232
Target:  5'- -gGCGGCCCGcuuucgccggcgGCAAGcgccgcGCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGGCa-----------CGUUU------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 104908 0.72 0.357562
Target:  5'- -cGgGGCCCGcGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCgCCGGGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 65268 0.72 0.34189
Target:  5'- -cGCGGCCgGUccGCA--GCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGgCA--CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 115805 0.73 0.312056
Target:  5'- cUGCGGCuCCGcgcgcUGCGcuGCGGCGGGc- -3'
miRNA:   3'- uACGCCG-GGC-----ACGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 77098 0.79 0.124291
Target:  5'- -gGCGGCCCGcGCGcgguAGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGUu---UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 81219 0.72 0.349664
Target:  5'- gAUGCaGGCUCGgcgGCAGcGGCGGCGGGc- -3'
miRNA:   3'- -UACG-CCGGGCa--CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 13960 0.77 0.175647
Target:  5'- cUGCGGCCCGUgggagcccgccccugGCcggcAAGCGGCGGGUc -3'
miRNA:   3'- uACGCCGGGCA---------------CGu---UUUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 106740 0.73 0.312056
Target:  5'- uUGCGcGCCCGcgcugGCGccGCGGCGGGg- -3'
miRNA:   3'- uACGC-CGGGCa----CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 49714 0.72 0.357562
Target:  5'- -cGCGgcGCCCGUGCAAGugGGCGccggcgaggcGGUg -3'
miRNA:   3'- uaCGC--CGGGCACGUUUugCCGC----------CCAa -5'
6346 5' -59.2 NC_001847.1 + 131602 0.71 0.390388
Target:  5'- -aGCGGCgCGUGCAGGGCuGcCGGGg- -3'
miRNA:   3'- uaCGCCGgGCACGUUUUGcC-GCCCaa -5'
6346 5' -59.2 NC_001847.1 + 20252 0.76 0.202243
Target:  5'- cUGCGGCCgCGagaGCGAGACGGCGaGGUc -3'
miRNA:   3'- uACGCCGG-GCa--CGUUUUGCCGC-CCAa -5'
6346 5' -59.2 NC_001847.1 + 17280 0.74 0.258421
Target:  5'- aGUGCaGGCgCGUGgAGcGCGGCGGGUa -3'
miRNA:   3'- -UACG-CCGgGCACgUUuUGCCGCCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.