miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 30812 0.67 0.641227
Target:  5'- cUGCcGCCgCG-GCAAAcacgGCGGCGGGg- -3'
miRNA:   3'- uACGcCGG-GCaCGUUU----UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 98229 0.67 0.641227
Target:  5'- -aGCGcGCCCaGggagGCGAcgccguGGCGGCGGGg- -3'
miRNA:   3'- uaCGC-CGGG-Ca---CGUU------UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 59377 0.67 0.641227
Target:  5'- -cGCGG-CCGUGUucacccgcGCGGCGGGc- -3'
miRNA:   3'- uaCGCCgGGCACGuuu-----UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 57971 0.67 0.630926
Target:  5'- -cGCGGCgUCGggagGCAGGAcCGGCGcGGUg -3'
miRNA:   3'- uaCGCCG-GGCa---CGUUUU-GCCGC-CCAa -5'
6346 5' -59.2 NC_001847.1 + 118459 0.67 0.630926
Target:  5'- -gGCGGCCuCGUGCcu-GCGGCGcaaGGc- -3'
miRNA:   3'- uaCGCCGG-GCACGuuuUGCCGC---CCaa -5'
6346 5' -59.2 NC_001847.1 + 100645 0.67 0.629896
Target:  5'- cUGCGGCgccagggCCGcGCugcuGCGGCGGGg- -3'
miRNA:   3'- uACGCCG-------GGCaCGuuu-UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 104785 0.67 0.629896
Target:  5'- -gGCGGCCCGccaGCGccuccccGGGCaGCGGGUc -3'
miRNA:   3'- uaCGCCGGGCa--CGU-------UUUGcCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 32056 0.67 0.620626
Target:  5'- ---aGGUCCGggGCGcggAGACGGCGGGg- -3'
miRNA:   3'- uacgCCGGGCa-CGU---UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 42733 0.67 0.620626
Target:  5'- -gGCGG-CCGcGC-GGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCgGGCaCGuUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 19164 0.67 0.620626
Target:  5'- -cGC-GCCCGUuguuaccccgcGCAGcACGGCGGGg- -3'
miRNA:   3'- uaCGcCGGGCA-----------CGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 83527 0.67 0.620626
Target:  5'- cUGCGGUCCGUGCGccGCccCGGGg- -3'
miRNA:   3'- uACGCCGGGCACGUuuUGccGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 85639 0.67 0.610335
Target:  5'- -cGC-GCCCG-GCGAAGCGGCgccgaucaGGGUg -3'
miRNA:   3'- uaCGcCGGGCaCGUUUUGCCG--------CCCAa -5'
6346 5' -59.2 NC_001847.1 + 117308 0.67 0.610335
Target:  5'- -cGCGaGCCgCGauggGCGAccuAGCGGCGGGg- -3'
miRNA:   3'- uaCGC-CGG-GCa---CGUU---UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 92138 0.67 0.610335
Target:  5'- -gGCGGCCCG-GCGcgccccccCGGCGGcGUUc -3'
miRNA:   3'- uaCGCCGGGCaCGUuuu-----GCCGCC-CAA- -5'
6346 5' -59.2 NC_001847.1 + 30763 0.67 0.610335
Target:  5'- -cGCGGCCCGcUGCAGcgccGCGcgucuGCGGGc- -3'
miRNA:   3'- uaCGCCGGGC-ACGUUu---UGC-----CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15516 0.68 0.60006
Target:  5'- gAUGCGGCUCG-GCGgGAGCcGCGGGc- -3'
miRNA:   3'- -UACGCCGGGCaCGU-UUUGcCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 12476 0.68 0.589809
Target:  5'- -cGCGGCUUcccGCGugGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGca-CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 132361 0.68 0.589809
Target:  5'- -cGCGGCCCuGgagGCcgc-CGGCGGGg- -3'
miRNA:   3'- uaCGCCGGG-Ca--CGuuuuGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 29548 0.68 0.589809
Target:  5'- -cGCGGCCCuGgagGCcgc-CGGCGGGg- -3'
miRNA:   3'- uaCGCCGGG-Ca--CGuuuuGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 71739 0.68 0.57959
Target:  5'- cGUGCGcuCCCGUGCGAGGCuGCGGc-- -3'
miRNA:   3'- -UACGCc-GGGCACGUUUUGcCGCCcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.