miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 41959 0.68 0.57959
Target:  5'- -cGCGG-CCGUGCAuAGugGGCGGc-- -3'
miRNA:   3'- uaCGCCgGGCACGU-UUugCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 51520 0.68 0.57959
Target:  5'- gGUGCGGCgCCG-GCA----GGCGGGg- -3'
miRNA:   3'- -UACGCCG-GGCaCGUuuugCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 71739 0.68 0.57959
Target:  5'- cGUGCGcuCCCGUGCGAGGCuGCGGc-- -3'
miRNA:   3'- -UACGCc-GGGCACGUUUUGcCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 116149 0.68 0.57959
Target:  5'- -cGCGGCCCGagGCGcuGGCGGCcgcGGGc- -3'
miRNA:   3'- uaCGCCGGGCa-CGUu-UUGCCG---CCCaa -5'
6346 5' -59.2 NC_001847.1 + 4805 0.68 0.569409
Target:  5'- -gGUGGCCUGggggagacgggGUAGGGgGGCGGGUg -3'
miRNA:   3'- uaCGCCGGGCa----------CGUUUUgCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 107618 0.68 0.569409
Target:  5'- -gGUGGCCUGggggagacgggGUAGGGgGGCGGGUg -3'
miRNA:   3'- uaCGCCGGGCa----------CGUUUUgCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 81475 0.68 0.559272
Target:  5'- uUGCGGCUgGcgGCAguuGAGCGGCccGGGUg -3'
miRNA:   3'- uACGCCGGgCa-CGU---UUUGCCG--CCCAa -5'
6346 5' -59.2 NC_001847.1 + 127211 0.68 0.559272
Target:  5'- -cGCcGCaaGcUGCAAAACGGCGGGg- -3'
miRNA:   3'- uaCGcCGggC-ACGUUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 131775 0.68 0.559272
Target:  5'- -cGCGGCUCGgcgcGCGGAuuGCGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa---CGUUU--UGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 33585 0.68 0.559272
Target:  5'- -cGCGGCCCGgGCu---CGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCaCGuuuuGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 6761 0.68 0.559272
Target:  5'- gGUGCGGCCgGUGCGAGGCGccagcugcuccGUGGc-- -3'
miRNA:   3'- -UACGCCGGgCACGUUUUGC-----------CGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 83241 0.68 0.549186
Target:  5'- -cGCGGCCgGggcgGCGGccgaaagcGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGgCa---CGUUu-------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 13535 0.68 0.549186
Target:  5'- -aGCGGCagcaaccgccgCCGggGCGGcGCGGUGGGUUg -3'
miRNA:   3'- uaCGCCG-----------GGCa-CGUUuUGCCGCCCAA- -5'
6346 5' -59.2 NC_001847.1 + 12335 0.68 0.549186
Target:  5'- -cGcCGGCUCGcUGguGAGCGGUGGGc- -3'
miRNA:   3'- uaC-GCCGGGC-ACguUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 113325 0.68 0.549186
Target:  5'- -gGCGGCUgGUGCAAGuCGGUGuGGc- -3'
miRNA:   3'- uaCGCCGGgCACGUUUuGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 134506 0.68 0.549186
Target:  5'- aGUGUGGgCCGUGCGGccGCGGCGcauguGGUg -3'
miRNA:   3'- -UACGCCgGGCACGUUu-UGCCGC-----CCAa -5'
6346 5' -59.2 NC_001847.1 + 100596 0.69 0.539158
Target:  5'- -gGCGGCCUGUGgcccCAAGcgccCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCAC----GUUUu---GCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 58744 0.69 0.539158
Target:  5'- -gGCGGCCCGacaGCG--GCGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa--CGUuuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 115710 0.69 0.538159
Target:  5'- cUGCGGCCCGUGUGcgcuugccgccacGGGCGcGCuGGUg -3'
miRNA:   3'- uACGCCGGGCACGU-------------UUUGC-CGcCCAa -5'
6346 5' -59.2 NC_001847.1 + 36379 0.69 0.529193
Target:  5'- -cGCGGCCCGgGCAGcgcgcgccGCGGCGacGGUg -3'
miRNA:   3'- uaCGCCGGGCaCGUUu-------UGCCGC--CCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.