miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 45426 0.66 0.902945
Target:  5'- gAGCGAaGGCUUGAGCCcagggCgcccgucgCGGCg- -3'
miRNA:   3'- -UCGCUgCUGAACUCGGa----Gaa------GCCGag -5'
6347 3' -55.4 NC_001847.1 + 2377 0.66 0.902945
Target:  5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3'
miRNA:   3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 13237 0.66 0.909235
Target:  5'- cGCGAUGGCcagcgGGGCCacgCgggCGGUUCg -3'
miRNA:   3'- uCGCUGCUGaa---CUCGGa--Gaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 56898 0.66 0.909235
Target:  5'- cGCGGCGACgucGGCCUCcagGGCg- -3'
miRNA:   3'- uCGCUGCUGaacUCGGAGaagCCGag -5'
6347 3' -55.4 NC_001847.1 + 96304 0.67 0.852359
Target:  5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3'
miRNA:   3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 129454 0.67 0.835955
Target:  5'- aAGCGGCuACUUGAGCUgg--CGGC-Cg -3'
miRNA:   3'- -UCGCUGcUGAACUCGGagaaGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 19007 0.68 0.80993
Target:  5'- gGGCGGCGcCcucGGCCUCUUCGcGCg- -3'
miRNA:   3'- -UCGCUGCuGaacUCGGAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 4313 0.74 0.459961
Target:  5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3'
miRNA:   3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 116401 0.73 0.506307
Target:  5'- cGGCGGCGGCgcucUGGGCCccgggccgcgcgCUUgGGCUCg -3'
miRNA:   3'- -UCGCUGCUGa---ACUCGGa-----------GAAgCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 15385 0.73 0.528212
Target:  5'- gGGCGGuCGGCgucggggcugGGGCCgggUUUCGGCUCg -3'
miRNA:   3'- -UCGCU-GCUGaa--------CUCGGa--GAAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 74721 0.71 0.631089
Target:  5'- cGCGugGACgccGAGCCU--UCGGCg- -3'
miRNA:   3'- uCGCugCUGaa-CUCGGAgaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 89051 0.71 0.662314
Target:  5'- gGGCGACGGCaUGGcgcGCCgggUUUCGGCg- -3'
miRNA:   3'- -UCGCUGCUGaACU---CGGa--GAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 1137 0.7 0.672684
Target:  5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 67306 0.7 0.713727
Target:  5'- cGGCGACGGCccuuuUUGGGCCgcgCggacgccgCGGCUUu -3'
miRNA:   3'- -UCGCUGCUG-----AACUCGGa--Gaa------GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 9870 0.69 0.753616
Target:  5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3'
miRNA:   3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5'
6347 3' -55.4 NC_001847.1 + 130260 0.69 0.753616
Target:  5'- uGCGACGACaaaaUGGGCUUCcgcgUGGCUg -3'
miRNA:   3'- uCGCUGCUGa---ACUCGGAGaa--GCCGAg -5'
6347 3' -55.4 NC_001847.1 + 75738 0.69 0.753616
Target:  5'- cAGCGAUGACcgccGcGCCUCcgcCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaa--CuCGGAGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 34082 0.69 0.763335
Target:  5'- cGCGGCGGCcccgGGGCCggCcUCGGCg- -3'
miRNA:   3'- uCGCUGCUGaa--CUCGGa-GaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 114647 0.68 0.79173
Target:  5'- cGCGACGACgcgcGAGCCgUCUUC--CUCg -3'
miRNA:   3'- uCGCUGCUGaa--CUCGG-AGAAGccGAG- -5'
6347 3' -55.4 NC_001847.1 + 117939 0.66 0.909235
Target:  5'- cGGuCGACGACUccGGGCuCUUUUCGcGCa- -3'
miRNA:   3'- -UC-GCUGCUGAa-CUCG-GAGAAGC-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.